Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02011 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCTGCTTTCTCTTCTGGCGATTTTGCTGGTGCCGTCCGTCACTTTTCCGATGCCATCGCTCTATCCCCTGACAACCATGTACTCTATTCGAATCGATCTGCTGCTTACGCTTCTCTTCAGAAATACAGCGAAGCATTAGACGACGCTAAGAAAACCGTCGGCTTGAAGCCCGATTGGTCGAAGGGTTACAGCCGTCTGGGTGCTGCACATCTTGGTCTGGGCCAACACGATGATGCTATTGCTGCTTACAAAAAAGGGCTTGAGATCGATCCTAATAATGAACCACTAAAATCCGGCTTAGCTGATGCCCAGTCGGCGGCTTCCAGACACCGTGCGCCGTCCAATAATCCGTTCGGAGATGCTTTTTCTGGGCCAGAGATGTGGGCAAAGCTCACTGCTGACCCGACTACTAGGACGTTTCTTCAACAACCAGATTTCGTGAAGATGATGCAAGATATTCAGAAAAATCccaataatttaaacttgtaCTTGAAGGATCAAAGAGTCATGCAAGCCCTTGGGGTTTTACTCAACATTAAGATGCGGGCGCCAACCGAGGATACAGATATGCCGGAGTTCTCGCCTTCGCCTCCGCCACAGTATAGGAAGAGAGCAGCAGAAACTGAACCTGTGAAGGAAGAGAAGCACCCCGAACCTGAGCCGGAGCCTATGGAATTGACAGAGGAGGAGGGGGGAGCAAAGGAGAAGAAGGCTGAGGCTCAGAAGGAGAAGGAGGCAGGCAATACGGCATACAAGAAGAAGGATTTCGAAACAGCTATTCAGCATTACTCGAAGGCTTTGGAGTTGGATGATGAGGATGTATCATACCTCACAAACCGCGCTGCTGTTTATTTGGAGATGGGAAAGTATGAGGAATGTATAAAGGACTGTGATAAGGCCGTTGAAAGGGGAAGAGAACTGAGATCCGACTTTAAGATGATAGCTAGAGCTTTAACGAGGAAGGGAACAGCATTGGTTAAAATGGCAAAATGCTCCAAGGATTTTGAACCTGCAATTGAGACTTTCCAAAAAGCACTTACAGAGCATCGCAACCCAGACACCTTGAAGAAATTGAACGATGCTGAGAAAGCTAAGAAAGAACTAGAACAAGAAGAATACTTTGATCCTAAAATTGCTGATGAGGAGCGAGACAAAGGTAATGAATTCTTCAAGCAGCAAAAGTATCCCGAGGCCGTAAAGCATTATACAGAGGCTATTAGAAGGAACCCTAAAGATCATAAGGCATACAGTAACAGAGCTGCTTGCTACACAAAACTGGGCGCATTGCCTGAGGGGTTGAAAGATGCAGATAAATGCATTGAGTTTGATCCAACGTTCTCCAAGGGTTACACTAGAAAAGGCGCAATCCAATTTTTCATGAAAGAATATGACAAAGCTTTGGAAACATATCAGGAGGGATTGAAACATGACTCAAACAACCAGGAGTTGCTCGATGGCATAAGAAGATGCGTCGAACAAATAAATAAGGCCAGCCGTGGAGATTTAAGCCCTGATGAGTTAAAGGAGAGACAGGCCAAGGCAATGCAGGATCCAGAGATTCAGAACATTCTCCAAGACCCTGTAATGAGACAGGTATTGACTGACTTCCAGGAGAATCCCAAGGCTGCACAGGAACACACAAAGAGTCCTATGGTGATGAACAAGATCCAAAAGCTGATCAGTGCTGGAATTGTCCAGATGAAATA 1736 0.4591 MADEAKAKGNAAFSSGDFAGAVRHFSDAIALSPDNHVLYSNRSAAYASLQKYSEALDDAKKTVGLKPDWSKGYSRLGAAHLGLGQHDDAIAAYKKGLEIDPNNEPLKSGLADAQSAASRHRAPSNNPFGDAFSGPEMWAKLTADPTTRTFLQQPDFVKMMQDIQKNPNNLNLYLKDQRVMQALGVLLNIKMRAPTEDTDMPEFSPSPPPQYRKRAAETEPVKEEKHPEPEPEPMELTEEEGGAKEKKAEAQKEKEAGNTAYKKKDFETAIQHYSKALELDDEDVSYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDFEPAIETFQKALTEHRNPDTLKKLNDAEKAKKELEQEEYFDPKIADEERDKGNEFFKQQKYPEAVKHYTEAIRRNPKDHKAYSNRAACYTKLGALPEGLKDADKCIEFDPTFSKGYTRKGAIQFFMKEYDKALETYQEGLKHDSNNQELLDGIRRCVEQINKASRGDLSPDELKERQAKAMQDPEIQNILQDPVMRQVLTDFQENPKAAQEHTKSPMVMNKIQKLISAGIVQMK 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02011 578 SUPERFAMILY TPR-like 249 377 IPR011990 GO:0005515
Bva11g02011 578 Pfam STI1 domain 135 188 IPR041243 -
Bva11g02011 578 Pfam STI1 domain 519 570 IPR041243 -
Bva11g02011 578 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Bva11g02011 578 PANTHER TPR REPEAT CONTAINING PROTEIN 1 577 IPR045248 GO:0006457|GO:0030544|GO:0051879
Bva11g02011 578 Pfam TPR repeat 257 298 - -
Bva11g02011 578 Pfam TPR repeat 396 437 - -
Bva11g02011 578 Gene3D Tetratricopeptide repeat domain 247 383 IPR011990 GO:0005515
Bva11g02011 578 ProSiteProfiles TPR repeat profile. 250 283 IPR019734 GO:0005515
Bva11g02011 578 Pfam Tetratricopeptide repeat 7 67 - -
Bva11g02011 578 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 577 - -
Bva11g02011 578 MobiDBLite consensus disorder prediction 215 256 - -
Bva11g02011 578 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Bva11g02011 578 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Bva11g02011 578 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Bva11g02011 578 Coils Coil 361 381 - -
Bva11g02011 578 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Bva11g02011 578 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Bva11g02011 578 ProSiteProfiles TPR repeat profile. 457 490 IPR019734 GO:0005515
Bva11g02011 578 SMART CBM 134 173 IPR006636 -
Bva11g02011 578 SMART CBM 527 566 IPR006636 -
Bva11g02011 578 SUPERFAMILY TPR-like 388 501 IPR011990 GO:0005515
Bva11g02011 578 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Bva11g02011 578 Gene3D Tetratricopeptide repeat domain 387 502 IPR011990 GO:0005515
Bva11g02011 578 MobiDBLite consensus disorder prediction 196 256 - -
Bva11g02011 578 Gene3D - 125 192 - -
Bva11g02011 578 Gene3D - 509 578 - -
Bva11g02011 578 SMART tpr_5 36 69 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 250 283 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 2 35 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 423 456 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 284 317 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 389 422 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 325 362 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 70 103 IPR019734 GO:0005515
Bva11g02011 578 SMART tpr_5 457 490 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02011 Bva-Chr11 17041436 17044649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02011 248 393 U-box Gene Family AT3G07370 26.027 9.43e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02011 K09553 - jre:109011336 952.97