Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01975 ATGGAGAAGCACAAATGTAAGCTTTGCTCTAGGACATTCGCCAATGGCAGAGCATTGGGTGGCCACATGAAGGCGCATTTGGCCACCCTTCCCCTTCCTCCAAAGCCCGAACCAGTCAGTGACTCAGCTTCATTCTCATATCTCTCTTCCGAAGAAGAACTTGAATACGGAGAGCCAGAGGAAAAGGCGTTGATTTATGGGTTGAGGGAGAATCCCAAGAAAAGTTTCAGACTTGCGGATCCTGAGTTTTCTTTTGCTGTTGACAATGGGCCTGTCGTCCTGGATAGAGAGAGCGAGACCGAGTCCAGGAACACAACTCGGCGGCGATCCAAGAGAAACCGAAAATCTACCGTGGCAGGAAGCCAAACCCCGACCCAGGACGAGAAATTGGAACTTAAGAGGTCTAAACCGAGTCCTCCAGAGTCACCGACTGAGCCTGAACCGGCTAGCTCAGTTTCTGATACTTCCTCTGAAGAAGATGTTGCTATGTGCCTCATGATGCTCTCAAGGGACAGATGGATAAGAAATACTGTCAAAGAAGAGCAAGAGCTGAGATCAGTAGAGGAATCAAAGGGATTGGAAGAGATCAAGTCCAAGAGAGTTCGCAGGAAGCACCAGTGTGACAACTGTAGAAAAACGTTTCGATCTTCTCGGGCATTAGCCAGTCACAAAAACATCTGCTTTCTTGATGAAGCTCAAGTTCAGAATGcaggtaataataataaaatttttgaatgccCGTATTGTCATAAGATATTTGGGTCAGGACAAGCACTTGGTGGTCACAAGAGATCTCATCTCTTGGCATCTTCACCATCTAACGTGAAAGATTCTGGTACATTAAGAGAGGCTATAATAGATCTCAACTTGCCAGCTCCAGAAGAAGATGAACTTAGCGTGGTTTCTGATGCATA 914 0.454 MEKHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPVSDSASFSYLSSEEELEYGEPEEKALIYGLRENPKKSFRLADPEFSFAVDNGPVVLDRESETESRNTTRRRSKRNRKSTVAGSQTPTQDEKLELKRSKPSPPESPTEPEPASSVSDTSSEEDVAMCLMMLSRDRWIRNTVKEEQELRSVEESKGLEEIKSKRVRRKHQCDNCRKTFRSSRALASHKNICFLDEAQVQNAGNNNKIFECPYCHKIFGSGQALGGHKRSHLLASSPSNVKDSGTLREAIIDLNLPAPEEDELSVVSDA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01975 304 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Bva11g01975 304 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Bva11g01975 304 SUPERFAMILY beta-beta-alpha zinc fingers 203 266 IPR036236 -
Bva11g01975 304 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Bva11g01975 304 Pfam C2H2-type zinc finger 244 266 - -
Bva11g01975 304 Pfam C2H2-type zinc finger 4 28 - -
Bva11g01975 304 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 304 IPR044303 GO:0006355
Bva11g01975 304 MobiDBLite consensus disorder prediction 94 158 - -
Bva11g01975 304 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 304 - -
Bva11g01975 304 Gene3D Classic Zinc Finger 177 268 - -
Bva11g01975 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 266 IPR013087 -
Bva11g01975 304 SMART c2h2final6 205 225 IPR013087 -
Bva11g01975 304 SMART c2h2final6 244 266 IPR013087 -
Bva11g01975 304 SMART c2h2final6 4 26 IPR013087 -
Bva11g01975 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01975 Bva-Chr11 16844626 16845834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01975 1 301 C2H2 Transcription Factor Family AT3G60580 36.036 1.57e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva11g01975 zf-C2H2_6 1.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01975 - - qsu:112028002 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00324 08 1588328 1589492 Bva11g01975 11 16844626 16845834 BWGD