Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01954 ATGGAAGATGAAACTTTCCTTATAGACAGTGAAGCTCAACCAAccacttccttttcttcaaccCTTATTACCTCCATTTCTATCTCAACATCAACCTATTCTTCCTCTAATTCCTCCATAGAAGCCAATGCAGAGCTGAGAAATCAACAAGTTTgcagtgaaaataaaaaaaagataaagaaaggcATTGATGGGAAGCACCCATATCGTGGAGTACGCATGCGGCAATGGGGCAAATGGGTATCAGAAATCAGAgaaccaaagaagaaatcaagaatttGGCTTGGCACTTTCCCTACGCCAGAGATGGCGGCTCGAGCTCATGACGTAGCAGCTCTTACAATCAAAGGCAGCTCGGCTTTCCTCAATTTCCCCGAACTGGCTCAAGACCTTCCACGTCCCGCCAGCACTTCTCCTAAGGACATTCAAGCTGCGGCGGCAAAAGCAGCCGCCATAGATTACGTAGGAAGCCATGAAACCCAACCGAAGCTAAGCCAAAGCACATTGTCATCTTCCCATGACACTCAGGAAACATCAAATTCACCGTTAACTGATGAAGATGACACATTTGACCTCCCTGATCTTTTAATCGACTTGAATCGAAGTATACAAGATGAGTTCACTTACTCGTCTCCGTGGCTAGTGGCTGCACCTGAACTTCTAGACTCATCGTCCCGGCTGGAGGactctttcccttttctctgGGACACTTACTA 716 0.4106 MEDETFLIDSEAQPTTSFSSTLITSISISTSTYSSSNSSIEANAELRNQQVCSENKKKIKKGIDGKHPYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTIKGSSAFLNFPELAQDLPRPASTSPKDIQAAAAKAAAIDYVGSHETQPKLSQSTLSSSHDTQETSNSPLTDEDDTFDLPDLLIDLNRSIQDEFTYSSPWLVAAPELLDSSSRLEDSFPFLWDTY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01954 238 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Bva11g01954 238 Pfam AP2 domain 69 117 IPR001471 GO:0003700|GO:0006355
Bva11g01954 238 MobiDBLite consensus disorder prediction 162 189 - -
Bva11g01954 238 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
Bva11g01954 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 211 - -
Bva11g01954 238 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Bva11g01954 238 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Bva11g01954 238 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Bva11g01954 238 MobiDBLite consensus disorder prediction 162 186 - -
Bva11g01954 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 20 211 - -
Bva11g01954 238 SUPERFAMILY DNA-binding domain 69 126 IPR016177 GO:0003677
Bva11g01954 238 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01954 Bva-Chr11 16735634 16736529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01954 54 153 AP2-EREBP Transcription Factor Family AT5G11590 75.490 2.38e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva11g01954 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01954 - - qsu:111999823 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00342 08 1692644 1693524 Bva11g01954 11 16735634 16736529 BWGD