Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01948 ATGATGGTTCAAAAAGAAGATTTGGGTTTGAGTTTAAGCTTGAGCTTCCCTCAGAGCAACCCAGATCCTCTGCACCTCAATCTCACTTCTACTTACTCCTCCTCTCCTTCTGCTTCTAACCTTCAGAAACCCTCTTGGAACGAGGCTTTAACATCCTCAGATCGAGATTCCGAGACATGCAGAGCTGAAGGTCGATCTTTCCTCCGAGGAATCGACGTGAATCGATTGCCTTCGGCGGTTGATTGCGAAGACGAGGCAGGGGTTTCGTCTCCAAATAGCACGATTTCGAGCGTGAGCGGTAAGCGAAGTGAGAGGGAACCAAACGGAGAAGAGCATGAGAACGAGATGGACAGAGCTTGTTCTCGAGGAATCAGCGACGAAGAAGACGGAGAAACCTCCAGAAAAAAGCTCAGGCTCTCTAAAGATCAATCTGCTATTCTTGAAGAGAGCTTCAAAGAGCACAACACTCTGAACCCCAAGCAGAAGTCGGCGTTGGCAAAGCAGCTGGGCCTTCGACCAAGACAAGTAGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACTAAGCTGAAGCAAACTGAGGTAGACTGTGAGTTCTTGAAAAGGTGGTGCGAGAATTTGACGGAGGAGAATAGACGGTTGCAGAAGGAAGTTCAGGAGCTCAGAGCACTCAAACTTTCCCCACAACTCTACATGCAAATGACCCCTCCCACCACCCTCACCATGTGCCCTTCGTGCGAGCGCGTTGCTGTTCCGCCGTCTGCGGTGGAAGCCGGCCACCACCATCCCATAGCCCCAGTTCACACTCGGCCCATTCCCATCGCCCCGTGGGCCACAGCAGCTCCTATTACACACAGGCCCTTCGAAGCACTCCGTCAAAGATCCTA 884 0.5181 MMVQKEDLGLSLSLSFPQSNPDPLHLNLTSTYSSSPSASNLQKPSWNEALTSSDRDSETCRAEGRSFLRGIDVNRLPSAVDCEDEAGVSSPNSTISSVSGKRSEREPNGEEHENEMDRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKSALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRWCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPSAVEAGHHHPIAPVHTRPIPIAPWATAAPITHRPFEALRQRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01948 294 CDD homeodomain 134 191 IPR001356 GO:0003677
Bva11g01948 294 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Bva11g01948 294 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Bva11g01948 294 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Bva11g01948 294 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Bva11g01948 294 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 285 - -
Bva11g01948 294 Coils Coil 196 226 - -
Bva11g01948 294 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Bva11g01948 294 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Bva11g01948 294 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Bva11g01948 294 MobiDBLite consensus disorder prediction 13 58 - -
Bva11g01948 294 Pfam HD-ZIP protein N terminus 2 106 IPR006712 GO:0005634
Bva11g01948 294 SMART HOX_1 132 194 IPR001356 GO:0003677
Bva11g01948 294 MobiDBLite consensus disorder prediction 103 139 - -
Bva11g01948 294 MobiDBLite consensus disorder prediction 13 53 - -
Bva11g01948 294 Gene3D - 138 188 - -
Bva11g01948 294 PANTHER - 4 285 - -
Bva11g01948 294 MobiDBLite consensus disorder prediction 81 139 - -
Bva11g01948 294 MobiDBLite consensus disorder prediction 87 102 - -
Bva11g01948 294 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01948 Bva-Chr11 16692492 16694520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01948 1 294 Homeobox Transcription Factor Family AT5G47370 61.889 3.76e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva11g01948 HD-ZIP_N 3.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01948 K09338 - gmx:100813367 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00348 08 1727275 1729316 Bva11g01948 11 16692492 16694520 BWGD