Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01942 ATGGCGAACCCAATTGAAGTTTCGGCCCTTGAACAGATAAAATTGCATCTTCTAGGCGAACTATCTCCGGTGGGAACCTTCTCCACCGCTCTTTGCAGCTCGCCAACCGAAAATCTATGGTTTGACGAAGCAAACCTAGCAGATTCAACTTCTCAATCTGATTCCCTCTGTTCCCAATCTTCGAGCTCCGCTTCTTCCACCAACGTGTCTGATTACTTCACTGAAATATTCGACTTCCCAATGAATTCCATGCCTTCCGCAGAAAATCAAGTTAATCTTTTTGAAATCGAGTCAAAACCCCAAGTGATTGACCTTTCCACACCAAAAATGGAGACAGAAATTTCACAGTTACACAACAATTTCTCCCAATTCGAATCAAATTCACAGTCCAATAGTGGTATCTTCGAGTTCCAACCAAGGACTCAAAACGTGGAGAAGAAAGCTCAATCGAATCGGAAACCATCGTTGCAAATCTCGGTTCCAAAGAAAACCGAGTGGATCCAGTTTGGAAACCCAGATGAGCAACAGGAATTTCCAGAAATGTTCGAGCAGAATAATTCAAACCAAGCAGATAAGAGGCACTATAGAGGGGTCCGACAGAGACCGTGGGGCAAGTTCGCTGCCGAGATCCGCGACCCGAAGAAACGGGGATCCAGAGTTTGGCTTGGAACTTTCGACACAGCTATAGAAGCCGCCAAAGCCTACGACCGAGCTGCGTTTAAACTCCGTGGCTCCAAAGCCATCCTCAACTTCCCTCTCGAAGCCGGCAAATCCATTCCCGTCAGCGGCACTGACTATAGAAAACGCTGCCGTGAAGACGACGAGGTAGAGGCGCAAGTGGAGGTAAAGGCAGTggtgaagaaggaaaaaacgGAAGAATCCGACATCAGCCGTATAAAGGACATTCCGTTAACGCCCTCTACTTGGACATCGCTATGGGACAATGATGCCAGAGGCATTTTCAACATCCCACCGTTGTCACCGTTATCTCCCCACCCGACTCTGGGTTATCAGCTTATGGTTGTATG 1028 0.4669 MANPIEVSALEQIKLHLLGELSPVGTFSTALCSSPTENLWFDEANLADSTSQSDSLCSQSSSSASSTNVSDYFTEIFDFPMNSMPSAENQVNLFEIESKPQVIDLSTPKMETEISQLHNNFSQFESNSQSNSGIFEFQPRTQNVEKKAQSNRKPSLQISVPKKTEWIQFGNPDEQQEFPEMFEQNNSNQADKRHYRGVRQRPWGKFAAEIRDPKKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEAGKSIPVSGTDYRKRCREDDEVEAQVEVKAVVKKEKTEESDISRIKDIPLTPSTWTSLWDNDARGIFNIPPLSPLSPHPTLGYQLMVV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01942 342 Pfam AP2 domain 194 244 IPR001471 GO:0003700|GO:0006355
Bva11g01942 342 SUPERFAMILY DNA-binding domain 194 253 IPR016177 GO:0003677
Bva11g01942 342 CDD AP2 194 252 IPR001471 GO:0003700|GO:0006355
Bva11g01942 342 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 328 - -
Bva11g01942 342 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 328 - -
Bva11g01942 342 ProSiteProfiles AP2/ERF domain profile. 194 252 IPR001471 GO:0003700|GO:0006355
Bva11g01942 342 SMART rav1_2 194 258 IPR001471 GO:0003700|GO:0006355
Bva11g01942 342 Gene3D AP2/ERF domain 193 254 IPR036955 GO:0003700|GO:0006355
Bva11g01942 342 PRINTS Ethylene responsive element binding protein signature 195 206 IPR001471 GO:0003700|GO:0006355
Bva11g01942 342 PRINTS Ethylene responsive element binding protein signature 234 254 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01942 Bva-Chr11 16660404 16661588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01942 1 342 AP2-EREBP Transcription Factor Family AT5G47230 45.402 2.43e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva11g01942 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01942 K09286 - gmx:100808173 295.819