Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01941 ATGTACGGGCAGAGTAGCACCGAGTCCGATTTAGCCCTTTTGGAGTCCGTTCGGCGGCACCTGCTGGGTGATTCCGAGAATCGATTAATCAATTCGGGCAACGCTCCGTTTTACTGTCGGAGCTCCAGTTTCAGTAGCTTGTACCCTTGCTTGAGTGATAATTGGGGTGAATTGCCGCTCAAAGAGGATGATTCTGAGGACATGGTACTCTACGGTGTATTGCGAGATGCTGTTAATGTAGGATGGGTCCCATCTCTTGATGCTGCTTCGCCAGATAGCTGTTCTTCCGGCTTGACGACGGTTACGGTTAAATCGGAGCCCGATGTGTCGCCGGTGGAACATAGCTCTCCGGAGAGTGTGCTGCCTCCGTCGGTGATTCAGCAAGAGAAAACTGTACCAGCGGCTGCGCCGTCAAAGGGGAAGCACTACCGAGGCGTGCGGCAACGACCGTGGGGGAAATTCGCAGCGGAGATCCGGGACCCGGCTAAAAATGGAGCAAGGGTTTGGCTCGGAACATTTGAAACAGCCGAAGACGCCGCGCTGGCTTACGATCGAGCCGCTTACAGGATGAGGGGTTCGCGAGCTCTATTGAATTTCCCGCTCCGGGTTAACTCGGGCGAGCCTGACCCGGTGCGAGTGACTTCGAAGAGGTCCTCGCCGGAGCCTACTAGTTCGTCATCAGAGAGTGGGTCACccaagagaaggaagaaagtaTCGGCTAAAGCCGGGTTGAAAACAGCACACGTGGCGTCTTGTACACATGGAGAACAGCTATTGGTTAACTA 785 0.535 MYGQSSTESDLALLESVRRHLLGDSENRLINSGNAPFYCRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLDAASPDSCSSGLTTVTVKSEPDVSPVEHSSPESVLPPSVIQQEKTVPAAAPSKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPTSSSSESGSPKRRKKVSAKAGLKTAHVASCTHGEQLLVN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01941 261 Pfam AP2 domain 142 192 IPR001471 GO:0003700|GO:0006355
Bva11g01941 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 29 240 - -
Bva11g01941 261 MobiDBLite consensus disorder prediction 90 123 - -
Bva11g01941 261 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Bva11g01941 261 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Bva11g01941 261 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Bva11g01941 261 MobiDBLite consensus disorder prediction 90 106 - -
Bva11g01941 261 PANTHER DNA-BINDING DOMAIN 29 240 IPR044808 GO:0003700|GO:0009873
Bva11g01941 261 CDD AP2 141 200 IPR001471 GO:0003700|GO:0006355
Bva11g01941 261 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Bva11g01941 261 MobiDBLite consensus disorder prediction 205 246 - -
Bva11g01941 261 Gene3D AP2/ERF domain 141 203 IPR036955 GO:0003700|GO:0006355
Bva11g01941 261 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01941 Bva-Chr11 16653078 16654295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01941 1 260 AP2-EREBP Transcription Factor Family AT4G17500 54.093 1.89e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva11g01941 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01941 K09286 - qsu:112036215 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01941 11 16653078 16654295 Bva11g01941 11 16653078 16654295 ECH