Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01915 ATGTTGTGCAAGATGCCCGTAGCATCGAGAACTCGGTCCAGGGCGAAGAACAATGAAATGGGAGTGAAGAAACAGAGCAGGAAGAATGATGGTAATTTGGAGATTAAGAAACAGAGCAATAAAAAAAACGCGGTTGGTCCGGTTAGTGACACACAACCCGACTCAGTGTTTGCCCGGGGAAAACCACTTAGGGCTAATCTGGAGAAAGAAGTGTATAGCGAGGATGAAGACgtgaaactttgtcaggtggGTGATAGTGATGATGACGATTTGTATATTGTAGTGCCTCAGGAGAAATATGAGGACGTTATTGATCTTGCTTCATCGTCCGAAGTTGAAGACGATGATATAGACGAGGATGTTCCCGAGAGAAGCGAGGTTTCTGCTGCTGTTGATGATGAGGATGAGTCATTCCCTGACCATGGGTACAATGAAGAGGAAATTCTTGCAGATTCCGGTAGCCCCGAGGATATGATTTCAGGAGACTCATCGGGAGAAAACATAGAATTTGTTGAAGAAAGTGAGACCAAGAAGACAGGGCAAAAGACAAAGACTATTGAGCCTGGACTGAAGAGGAGAACAGCATATGGCCTCGACATATTGATTCAAGAACGCGATTCTAGGGAGGATGCTACCGCTTCCGTACATGCGGGCAAATCTGTTGCACAACGAACACGTTCCCATTCAAAACGTaagaccaaaaaattaaagttgggAACTTTAAGTCAACCCATATGTATCGACCAGGAGGATGAGGATGAGGAAGAGCCAGAGTTTGGTTCTGATTATGGCGATTTGGAGGATGCATCAAATTACATTATTCggaaaaggaggaagaagactaCTTTTAGGAAAACCCTCTCTTTTGATGAGGAGGATGAGGAAGAGTCTGACTCGGATTCCGAGCACTGTGATTTGAACGACAAAACAAATCGCGTTCTTACGAAAAAGAATGCTACCAGAAGCAAATCGGCCTCATATGATGGTATTGATGATGAAAATCACGAGGAGTTCCATAATGGGGATGGAGCTAGTGGTGGTTCTGATGAAGCAAAATCTAGTGGCGATGAAATGGATGGCAATACATGTGCGCAGAATGTAGACAGGAGATGGAAGCGGAGGAAGTCCTCAGCAAAAAAACACATCCCTTCAAAGAAAGATTATGATGTAATCAAGATTCTTCATGATTCCATCTGTAATAAGGGAGACGTGCCTCTAGAGAATTTAGTTTCATCAACAAATCACGACTCTAATCCAGCAGATATTACTTTACCGTTGAAGTTTAAATATGGAACAGAGGAGACACCACCCGAGATATCGGAAGAACAGAAAGAATTAGAGCGACTCTGGGCTGAGTATGATCGGATTTTAGACATTACAGTGCAAAATTCTGATCCTGTTGCTGCTGAGCAGGTTGAAAATGATATGGATGCTGCAAACACAGCTACTCTATGCCAATGCCAGCAAGGGAAACATAGACTTATTATTGATGATGAAATTGGAATTACATGTGCAATTTGCTTTCATGTAGACACGGAGATTAAGCACATTGTAGCTCCTTTTAGTAAATATCCCTTTGGAAAGTCAGGCAAGAGAGACTCTTGTGCGGACCACGTGGACCAAACTATGTTTAATGATCTTGAGCGTCAATTCACTGGTTGGGATAACTTGTCTAGCCATGATCACAATTGCAGTGGAACAGTTTGGGATATAATTCCTGGCGTAAAGAATAGAATGTACCCTCACCAGTGTGAtgcttttgaatttctttggaAGAAGATAGCTAGTGAAATTGTTCTTGACAAGTTGAAACAGCAAGTAGATTTTCCTGATGGGGGTGGCTGCATTATATCACATGCTCCCGGCACTGGGAAAACCCTTCTTACTATCGTATTTCTCTGGTCCTTCATGAAACTATATCCCAATTGCAGACCAATTATCATTGCCCCTAAGAGCATGCTTCTTACATGGGAAGAAGAATTTAGCAAGTGGAAAGAAGAATTTGGCAAGTGGAAAATTGACATTCCCCGCATTCCCTTTCACAATTTGAACAATGATGAGTACTCTGGCATGGAGAGTAAGGTAGCTATGAGCCTTCTGAAGAAATCTGGATTTAGTACTATTACAAACAAGGAAACTATACGTTTGGTGAAGTTGTTTTCCTGGAAAAAGGAGAGAAGTATCTTGGGAATTGGTTATAGTTTGTTCAAGACACTTGCTGGAAGAAGCAAGGATTTAAGGGAAGCCCTTCTAGAGCTTCCTGGTTTATTAGTTCTCGATGAGGGTCACACCCCTCGCAATGATAGATCTCATATATGGAAAGCTGTGTCAGAAATCCGGACAAGAAAACGAATCATCCTCTCCGGAACTCCCTTTCAGAATACCTTCGATGAGCTATACAACACACTCTGCTTGGCGAGTCCAATATTTGGAGGAggcaagaaaaatgaaaccaaagGGAAGTGGACATATCTGATCAATGCAATTGGCAAAGCTAGTgataaaaatggagaaaaaaataagttattgaGTGAAGTCAAGGGAATGATTCGTCCATTTGTGCATGTATACAAGGGTTCCATCCTGCAGGAGACTCTTCCTGGGTTGAAGGTGTTGGACATTGTTTTAAAGCCAACCAACTTGCAGAAGAAACTTCTTGAGGATATTCaggaagacaagaaaaaactaaagaaTGAACATTTAGAGTCTTTAATTGCTGTTCATCCTTCGCTCTTTCCATCTGAAGAGAGCGGCAAGTTAGAAAGAAGTAGAATAAATACTGAGGATGGAgtcaagacaaaatttttaatggaaCTCATCAGGCTTAGTGCACTTGTGAATGAAAAAGTCTTGGTTTTTAGTCAGTACATAGCACCCTTAACCTTTCTGACAGATCAGCTTAAATCTCGTTTTAATTGGAGGGAAGGAAAAGAGGTGTTAGTGATACGGGGAAAAGATGATGTGAAGCAACGTCAAGCATCTATTAGCACTTTTAATGACCCTGCTGGCAAAGCAAGGGTATTGCTAGCATCAAAGAAGGCATGTTTTGAAGGGATTAGTCTGATTGGTGCTTCCAGAGTTGTTCTGCTTGATGTTGAATGGAATCCTGCGGTAGAACGGCAAGCTGTGAGCCGTGCATATCGTGTTGGGCAGAAGAAAGAGGTGTACACTTACCGTCTTATCTCAGCAGGCACAAGGGAGGAAGAGAAATGTAGTCGTCAAGCTGAGAAGGATCACTTGTCTGAATTTATGTTCTCTAGTTCTGATGGGGCTGGCTGCTGTCAGAAGAATACCTCGCCTGCGCTTTTTAAAGATGAAATTCTAGAACAGATGCTTCatcatgaaaattttagacATATGTTTGATAGGGTAGCTACTAATAAAAGATCAATTTTTGAAGATGTTTTCTGTCTGCTGGACAAATG 3425 0.3991 MLCKMPVASRTRSRAKNNEMGVKKQSRKNDGNLEIKKQSNKKNAVGPVSDTQPDSVFARGKPLRANLEKEVYSEDEDVKLCQVGDSDDDDLYIVVPQEKYEDVIDLASSSEVEDDDIDEDVPERSEVSAAVDDEDESFPDHGYNEEEILADSGSPEDMISGDSSGENIEFVEESETKKTGQKTKTIEPGLKRRTAYGLDILIQERDSREDATASVHAGKSVAQRTRSHSKRKTKKLKLGTLSQPICIDQEDEDEEEPEFGSDYGDLEDASNYIIRKRRKKTTFRKTLSFDEEDEEESDSDSEHCDLNDKTNRVLTKKNATRSKSASYDGIDDENHEEFHNGDGASGGSDEAKSSGDEMDGNTCAQNVDRRWKRRKSSAKKHIPSKKDYDVIKILHDSICNKGDVPLENLVSSTNHDSNPADITLPLKFKYGTEETPPEISEEQKELERLWAEYDRILDITVQNSDPVAAEQVENDMDAANTATLCQCQQGKHRLIIDDEIGITCAICFHVDTEIKHIVAPFSKYPFGKSGKRDSCADHVDQTMFNDLERQFTGWDNLSSHDHNCSGTVWDIIPGVKNRMYPHQCDAFEFLWKKIASEIVLDKLKQQVDFPDGGGCIISHAPGTGKTLLTIVFLWSFMKLYPNCRPIIIAPKSMLLTWEEEFSKWKEEFGKWKIDIPRIPFHNLNNDEYSGMESKVAMSLLKKSGFSTITNKETIRLVKLFSWKKERSILGIGYSLFKTLAGRSKDLREALLELPGLLVLDEGHTPRNDRSHIWKAVSEIRTRKRIILSGTPFQNTFDELYNTLCLASPIFGGGKKNETKGKWTYLINAIGKASDKNGEKNKLLSEVKGMIRPFVHVYKGSILQETLPGLKVLDIVLKPTNLQKKLLEDIQEDKKKLKNEHLESLIAVHPSLFPSEESGKLERSRINTEDGVKTKFLMELIRLSALVNEKVLVFSQYIAPLTFLTDQLKSRFNWREGKEVLVIRGKDDVKQRQASISTFNDPAGKARVLLASKKACFEGISLIGASRVVLLDVEWNPAVERQAVSRAYRVGQKKEVYTYRLISAGTREEEKCSRQAEKDHLSEFMFSSSDGAGCCQKNTSPALFKDEILEQMLHHENFRHMFDRVATNKRSIFEDVFCLLDK 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01915 1141 MobiDBLite consensus disorder prediction 16 37 - -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 1 62 - -
Bva11g01915 1141 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1107 IPR001650 -
Bva11g01915 1141 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 1127 IPR044567 GO:0080188
Bva11g01915 1141 MobiDBLite consensus disorder prediction 171 189 - -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 106 141 - -
Bva11g01915 1141 Coils Coil 879 899 - -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 223 237 - -
Bva11g01915 1141 Gene3D - 554 853 IPR038718 -
Bva11g01915 1141 Pfam SNF2-related domain 611 888 IPR000330 GO:0005524|GO:0140658
Bva11g01915 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 1087 IPR027417 -
Bva11g01915 1141 SMART helicmild6 965 1050 IPR001650 -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 247 263 - -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 171 190 - -
Bva11g01915 1141 SMART ultradead3 575 817 IPR014001 -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 205 382 - -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 326 343 - -
Bva11g01915 1141 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 4 1127 - -
Bva11g01915 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 806 IPR027417 -
Bva11g01915 1141 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 606 809 IPR014001 -
Bva11g01915 1141 MobiDBLite consensus disorder prediction 107 122 - -
Bva11g01915 1141 Gene3D - 867 1133 IPR027417 -
Bva11g01915 1141 Pfam Helicase conserved C-terminal domain 934 1050 IPR001650 -
Bva11g01915 1141 CDD SF2_C_SNF 932 1061 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01915 Bva-Chr11 16525497 16529316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01915 947 1085 RAD5 or RAD16-like Gene Family AT5G05130 41.429 1.96e-18 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva11g01915 SNF2_N 3.5e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01915 K10875 - qsu:112000670 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01915 11 16525497 16529316 Bva11g01915 11 16525497 16529316 ECH