Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01909 ATGGCTGTTCAAGCTCAATATCCATCCAATGTTCTCTTCTTAAACAGCAGAAACGCACAAGAAGGACATGACTATTCATTACCACCACAACCAGGAGGACTGCTTGATCAATCCCACATGTTATTCAACAATGGAGGTATTAATTCACGCAAGAGAGGAAGGGAATCAACAGCTGCCACCGGCGTTGCCCAAACGGTTACTGATGTTATTAATCCATTCTCTTTGCAATCCCAGCCTCCTCAGCTTGTAGACCTCTCTCAGCTCCACAATCAGCCACCAAATGTGGTCTCCACCGGTCTCCGTTTATCGTTCGGTGACCAGCAGCAACAACTACATCAACAACGACTGCAATTACAGCGACAACAACAACACCAACAAAATGGGTATCACTCCTCTGCTTTGGTATCTGTATTGTCTGAAGGATTTGCCTCCCAAATCAAACAACAGAGAGATGAAATTGACCAGTTTCTTTATGCTCagGGAGAGCAGTTGCGGCGGGCATTAGTAGAAAAGAGGCATAGACATTACCATTCGCTACTAAGCGTAGCGGAAGAATCAGTGGCAAAACGGTTGGGAGATAAGGAGGTGGAGGTGGAGAAAGCTACGCGCAGGAACGCCCAGTTAGAGGCACGCGCAGCACAACTTAGCGTGGAAGCTCAGGTTTGGCAGGCGAAGGCCAAAGCTCAAGAGGCAACAGCTGCATCATTACAAGCGCAATTACAGCAGGCTATTATGAACGGTACAGCAATGGGTGGCCAAGACAAAAGGGGTGGCGGTTGTGCCGCTGAGGATGGTGGTCTATCACGCACGATGGGCGCAGTGGGACAAGCCGAGGATGCCGAGTCGGCTTATGTTGACCCGGACCGATTCGCGTTATCGGGACCAAAATGTAGAGGCTGCGGAAAGCGAGTTGCTTCGGTGGTGGTGTTGCCGTGTCGGCACCTATGCATCTGTACAGAATGTGACGCACAATTCCGAGCGTGCCCGGTCTGCCTCATCGTGAAAAAGTCAACCGTGGAAGTCAATCTATCTTA 1034 0.4981 MAVQAQYPSNVLFLNSRNAQEGHDYSLPPQPGGLLDQSHMLFNNGGINSRKRGRESTAATGVAQTVTDVINPFSLQSQPPQLVDLSQLHNQPPNVVSTGLRLSFGDQQQQLHQQRLQLQRQQQHQQNGYHSSALVSVLSEGFASQIKQQRDEIDQFLYAQGEQLRRALVEKRHRHYHSLLSVAEESVAKRLGDKEVEVEKATRRNAQLEARAAQLSVEAQVWQAKAKAQEATAASLQAQLQQAIMNGTAMGGQDKRGGGCAAEDGGLSRTMGAVGQAEDAESAYVDPDRFALSGPKCRGCGKRVASVVVLPCRHLCICTECDAQFRACPVCLIVKKSTVEVNLS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01909 344 Pfam Zinc finger, C3HC4 type (RING finger) 296 331 - -
Bva11g01909 344 Coils Coil 191 246 - -
Bva11g01909 344 PIRSF SBP1_RNase_bind 1 344 IPR017066 -
Bva11g01909 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Bva11g01909 344 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 343 - -
Bva11g01909 344 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 343 IPR017066 -
Bva11g01909 344 ProSiteProfiles Zinc finger RING-type profile. 297 331 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01909 Bva-Chr11 16482930 16485155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01909 293 331 C3H Transcription Factor Family AT3G06140 41.860 4.65e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01909 K19042 - gmx:100797727 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00401 08 2017981 2020099 Bva11g01909 11 16482930 16485155 BWGD
Bva11g01909 11 16482930 16485155 Bva11g01909 11 16482930 16485155 ECH