Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01872 ATGCCAGTTCCACTTGCTCCATACCCAACACCACCGGCTCCATGTACTCCTCCAGCAAATGGTGCGCAGAGTCAGCTAGTCTGTTCAGGATGTAGAAACCTGCTACTTTATCCCGTTGGAGCCACCTCTGTCTGCTGCGCCGTGTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGCACAGAAATGGCCCAGCTGATTTGTGGAGGATGCCACACTTTACTTATGTACATCCGCGGAGCAACAAGTGTGCAATGCTCCTGTTGTCACACTGTCAATCTAGCTCTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTAGGATGCTATTGATGTACCAGTATGGAGCAAGATCCGTGAAATGTGCAGTCTGCAATTTTGTGACATCAGTTGGGGCCTCAACAAGCACTACTGAGCAGAAGTTCAGCtgcta 437 0.5034 MPVPLAPYPTPPAPCTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASTSTTEQKFSC 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01872 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Bva11g01872 145 PANTHER PROTEIN LSD1 1 142 IPR040319 -
Bva11g01872 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Bva11g01872 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Bva11g01872 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Bva11g01872 145 PANTHER PROTEIN LOL1 1 142 - -
Bva11g01872 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Bva11g01872 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Bva11g01872 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01872 Bva-Chr11 16282697 16284691 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Bva11g01872 zf-LSD1 8.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01872 - - cit:102618163 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00446 08 2283486 2285234 Bva11g01872 11 16282697 16284691 BWGD