Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01866 ATGGCTGCAGAGGTTGGCCTTCTCTCCATGACCCAGATCCAAAAATTGTCACAATCCCAACACCAtcagaatcagaatcaaaatcaaaatcaacctCAACCAAACCCTAACTCTACTACTTCCACCTCATCTTGGATGTGGAACCCTAGGGAAAACCAGGAAGATGACGACTCTTGGGAGGTCAGAGCTTTTGCAGAAGACACCAGAAACATCATGGGTACCACTTGGCCCCCCAGGTCATACACCTGCACCTTCTGCAGAAGGGAATTCCGTTCAGCCCAAGCTCTAGGCGGCCACATGAACGTGCACCGCCGTGACCGGGCCAGGCTCCACCACCAAACCGAACCTTGTTCAGTCAACATCAATTCCAGCTCTATTCCCACATCCTCATTCATAATCCCAGCTCAAGAGCTTGTTGCAAATGGTGGATTGTGCCTTCTATACCGTTTGCCAAACCCTAATGGCACTTTTACTGCTACTCCCAGCAATGTAAATGCATGTGCTGAATCACCATCCACACTCCTTTCCATTTCACCTTACCCACCAAACAACCTGCAGATGCAAACTTGTTCTCCTTCCTTTGATTTTCCGGTGACAAGGTCAGCGATCAATTCCTCTTACTGTAATTCTAGCAAAGCCGAACAACACACCAGCTCCTCCAACAACAGTAATGGCCACGAAGAGCTTGATCTTGAGCTCCGGCTTGGGCACAGACCAACAACAACCTG 728 0.4753 MAAEVGLLSMTQIQKLSQSQHHQNQNQNQNQPQPNPNSTTSTSSWMWNPRENQEDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHQTEPCSVNINSSSIPTSSFIIPAQELVANGGLCLLYRLPNPNGTFTATPSNVNACAESPSTLLSISPYPPNNLQMQTCSPSFDFPVTRSAINSSYCNSSKAEQHTSSSNNSNGHEELDLELRLGHRPTTT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01866 242 PANTHER OS07G0101800 PROTEIN 46 227 - -
Bva11g01866 242 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 46 227 - -
Bva11g01866 242 MobiDBLite consensus disorder prediction 209 226 - -
Bva11g01866 242 MobiDBLite consensus disorder prediction 209 242 - -
Bva11g01866 242 MobiDBLite consensus disorder prediction 14 58 - -
Bva11g01866 242 Pfam C2H2-type zinc finger 81 105 - -
Bva11g01866 242 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Bva11g01866 242 Gene3D Classic Zinc Finger 72 129 - -
Bva11g01866 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Bva11g01866 242 MobiDBLite consensus disorder prediction 14 49 - -
Bva11g01866 242 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Bva11g01866 242 SMART c2h2final6 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01866 Bva-Chr11 16242419 16243147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01866 43 239 C2H2 Transcription Factor Family AT4G17810 41.589 4.26e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva11g01866 zf-C2H2_6 5.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01866 - - tcc:18606051 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00453 08 2325025 2325735 Bva11g01866 11 16242419 16243147 BWGD
Bva11g01866 11 16242419 16243147 Bva11g01866 11 16242419 16243147 ECH