Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01848 ATGGGACTTCCCGATACTGGTAATTCAGGCCTTGAGCTTGTTCTAGGGTTAAGTTTAAGTGGTGCAGAGGAAACCAATTCTCCTTCCAAGGCTGATAACGTTCTTAGGTCAACCATGCCTTGCCCCAATTTCACGGCAACAAGTAATTCAGAACCATCTTTGACGTTGGGTCTTTCCGGTGAGAGGTACCAAGCCCAAGTGCCCAGAAAGGTTGACGTCAATAAAGCTTGTGAAGACCCTCTTGAGCTGTCTCGCCAAACTTCACCTCATAGTGCTGTTTCGTCCTTCTCCAATGGAAGGGTCAAGAGGGAGAGAGATCTTAGCAGCGAAGAGGTTGAGGCAGAGAGGGTTTCTTCCAGAGTGagtgatgaagatgaagatggcACTAATGCCAGAAAGAAGCTCAGACTCACCAAAGAACAATCTGCCTTGCTCGAAGAAAGCTTCAAACAGCATAGCACTCTCAATCCTaagcagaagcaagCTTTGGCCAGGCAGTTAAAACTACGGCCACGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCTTAAAGAAATGCTGCGAAACATTGACAGATGAAAACAGAAGGCTACAGAAGGAGCTGCAAGAACTGAAGGCACTGAAACTGGCGCAGCCCATGTATATGCCTATGCCGGCGGCAACCCTTACCATGTGCCCGTCTTGTGAGAGGCTCATTGGAGGCAGTGATGCCGCTTCCAAAAAGAGTCCATTCTCATCAATGGCTCCCAAGAATCACTTCTTCAGCCCCTTCACCAATCCTTCTGCAGCATGTTG 836 0.4665 MGLPDTGNSGLELVLGLSLSGAEETNSPSKADNVLRSTMPCPNFTATSNSEPSLTLGLSGERYQAQVPRKVDVNKACEDPLELSRQTSPHSAVSSFSNGRVKRERDLSSEEVEAERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLKLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPMYMPMPAATLTMCPSCERLIGGSDAASKKSPFSSMAPKNHFFSPFTNPSAAC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01848 278 Coils Coil 194 224 - -
Bva11g01848 278 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Bva11g01848 278 SMART HOX_1 130 192 IPR001356 GO:0003677
Bva11g01848 278 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Bva11g01848 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 278 - -
Bva11g01848 278 MobiDBLite consensus disorder prediction 84 98 - -
Bva11g01848 278 Gene3D - 125 193 - -
Bva11g01848 278 MobiDBLite consensus disorder prediction 78 131 - -
Bva11g01848 278 PANTHER - 7 278 - -
Bva11g01848 278 SUPERFAMILY Homeodomain-like 121 189 IPR009057 -
Bva11g01848 278 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Bva11g01848 278 MobiDBLite consensus disorder prediction 21 56 - -
Bva11g01848 278 CDD homeodomain 132 189 IPR001356 GO:0003677
Bva11g01848 278 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Bva11g01848 278 MobiDBLite consensus disorder prediction 99 131 - -
Bva11g01848 278 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01848 Bva-Chr11 16154559 16156019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01848 1 278 Homeobox Transcription Factor Family AT4G37790 58.644 3.82e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva11g01848 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01848 K09338 - jre:109019457 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00475 08 2445221 2446624 Bva11g01848 11 16154559 16156019 BWGD