Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01845 ATGGGGAGAGCTCCTTGCTGCGACAAAGCCAACGTCAAGAAAGGGCCATGGTCGCCTGAGGAAGATACCAAACTCAAGGCTTATATCGAACAACATGGCACCGGCGGCAACTGGATTGCCCTGCCCCAGAAGATAGGCCTCAAGAGATGCGGCAAGAGTTGTCGTCTTAGATGGTTGAATTATCTGCGCCCAAACATCAAGCACGGGGGTTTCTCCGAGGAAGAAGACAACATAATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATCATTGCAGCTCAATTACCTGGGCGAACAGACAATGACATAAAGAACTACTGGAATACCAGACTCAAGAAGAAGCTTCTAGGCAAGCAGCGGAAGGAACAACAGGCCCACGCTCGCAGAGTTAGCAGTCTGAAGCAAGCAGAGATCAAAAGAGAGTGTCAAAATTTGATGGTACCGGCAGCAGTAATAAACCAAAATCCTTACCAGCCTTCAGAGATAATTTCTGTGCCTTCTCTGCCAGTGCCAAGTGCTTCCATCCAAGACTATGATCTGAACAATCAAGCTTCCCTTAGAAGTTTGTTAACCAAGCTGGGGGGGAAATTCTCAGACCAGCATCAACAACAATACACCACTGTAAACTCACAGTACCCGTACGACATTTCCTTCTCACAAGACCAAGTTTATCTAACTTGTATGAATATGATGAACCCAGCACCAGCAGCGATGGCGACCACTGCAAACGGTTGTCAGTCATTTAACATGTTTCAAGGGTTTGAGAGCTTGGCCGAAGATCATGATTTGATCGAGTTGGTATCTGTGAACCAACAGCAAATAGATGCAATGCAAGGTTTCTATGGAATTGAATCGATGGAGATGGGGCCCGGCAGCACAGGCACAAGTTCAACAGAAAGCACTAGTTGGGGAGACATGAGCATAAGCTCTCTGGTGTACTCACCTTTGGTTTCTGATGAATATGAAGGAATGCCTCATCCTCAGGATGTTGGTTTCCAGGAATCTAGATACTTTGGGATGCAATA 1031 0.4646 MGRAPCCDKANVKKGPWSPEEDTKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAHARRVSSLKQAEIKRECQNLMVPAAVINQNPYQPSEIISVPSLPVPSASIQDYDLNNQASLRSLLTKLGGKFSDQHQQQYTTVNSQYPYDISFSQDQVYLTCMNMMNPAPAAMATTANGCQSFNMFQGFESLAEDHDLIELVSVNQQQIDAMQGFYGIESMEMGPGSTGTSSTESTSWGDMSISSLVYSPLVSDEYEGMPHPQDVGFQESRYFGMQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01845 343 SMART sant 13 64 IPR001005 -
Bva11g01845 343 SMART sant 67 115 IPR001005 -
Bva11g01845 343 CDD SANT 71 113 IPR001005 -
Bva11g01845 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bva11g01845 343 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva11g01845 343 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva11g01845 343 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva11g01845 343 Gene3D - 7 68 - -
Bva11g01845 343 CDD SANT 16 62 IPR001005 -
Bva11g01845 343 Gene3D - 70 144 - -
Bva11g01845 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva11g01845 343 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva11g01845 343 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bva11g01845 343 PANTHER OS09G0431300 PROTEIN 1 324 - -
Bva11g01845 343 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01845 Bva-Chr11 16130820 16132369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01845 1 316 MYB Transcription Factor Family AT3G49690 49.235 4.08e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva11g01845 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01845 K09422 - gmx:100812816 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00479 08 2473937 2475726 Bva11g01845 11 16130820 16132369 BWGD