Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01839 ATGAAGTCGATGGAACATGTTGATGCCGATAACAATCAGAATAACTGGTTGGGTTTCTCTCTATCCCCACAGATGAACATGGATGTTTCTTCAGACCTCCATCAACATCATCACACACAGCTGTCCTCTGCTCCTGCTCAACCAGTTCCAGCCAGCTTTTACCACCCTTCAACTTTTGCTAACTATGGCGTTTACTATGGGCTTGAAGGTGAAAATATCAGCTTGTATTCTCATCTCCCTGTAATGCCCATTAAATCTGATGGGTCTCTCTATGTAATGGAAGCTTTGAGCAGGCCACAAGCGCAAGCAATCGTAACTACAACTCCAAAGCTGGAGAATTTCTTTGGCAACGCGGCAGTGGGAACCTCTCAGTATCAATGTAACGCCAGAGAAGCTATGGCACTAAGTTTAGACAGTATGATCTACAACCATTCCCCAAACCGTGAGTCAGACAACCAAAATGGCATAAACCATATCCAAGACACTTCCGGCTATCAAGAAAAAACCGATGATATTCATGCCCAACAGTTCTCATATGACTCTGCCTTAAGAAACCATGATATGGTTACAGAAGGGTCTAGGCAAAATCAAAATGCAGACTATAATCTCCAGGTCACAAATATTGCTGATGATGCAATTCCAGGCCTCAAGAGCTGGGTCTTAAGGAACTACCCAGGTAACCATGCACAGGATTCAAAGATGGTTGGTCTTGCAGCGGATAATTTTGGAGGCGAATCTGGGTCAATTAGTACAATAGGATATGGGGATTTGCAGTCATTGAGCTTGTCCATGAGTCCTAGCTCCCAATCAAGCTGTGTTACAAGTTCACAGCGGACTTCACCTACTGTCGTTGATTCTCTTGGTGATAAGAAAAGGGGATCTGAAAGTTTGAATCCGAAACAAATAGTTCACAGGAAATCCATAGATACATTTGGACAGAGAACCTCTCAATATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAGGCTCATCTGTGGGATAACAGCTGCAAGAAAGAAGGTCAAAGCAGGAAAGGAAGGCAAGTTTATCTAGgggGTTATGATATGGAGGAGAAAGCTGCAAGAGCTTATGATCTGGCTGCACTCAAGTATTGGGGGCCCTCCACTCATATTAATTTCccaTTGGAAAATTATCTAAATGAAATTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTGCGAAGAAGAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTACAGAGGAGTAACAAGACATCATCAACATGGACGCTGGCAAGCTCGAATTGGCAGGGTGGCTGGAAACAAAGATCTATATCTTGGAACGTTTAGTACCCAAGAGGAAGCAGCAGAAGCATACGACATTGCTGCTATAAAATTCCGTGGCTTAAATGCTGTTACCAACTTTGACATTTCAAGATATGATGTGGAAAAGATAATGGCAAGCAGTACCCTTCTCAGTGGCGAACTAGCTAAACGGCACAGGGAGATTGATATCCAAAATGAGGTCATTAACCATAACCATAACCCTTCTACATATGACGAGAAGCAAGAAGGCATTGGCATTCTATCACACAAGAGCTGTGATAGCCAATCAGAGTGGAAGATGGCTCCTTATCAATCGTCTCAACTAGTTGACCACAATCATAATCCAACTAGAGTTGATACTTACAGAACTCAATCCTTCTCAATGGGTTTGGATAATATGATTCAAGGACACATAGAGGACTCAACCAACATGGGTTGTTCGCATATGTCAAATCCTTCTTCCTTGGTATCAAGCTTGAACAACTCAAGAGAAGGTAGCCCGGATAAAACTAACTTGCCGATGCTCTCTGGAATTTCTGACGTCAACACTAACTCTTGGGCCCCATCACCCCATTTGAGGCCTGCACTTTCTTTGCCACAAGTGCCAGTTTTTGCTTCTTGGGCAGATTCATA 1961 0.4284 MKSMEHVDADNNQNNWLGFSLSPQMNMDVSSDLHQHHHTQLSSAPAQPVPASFYHPSTFANYGVYYGLEGENISLYSHLPVMPIKSDGSLYVMEALSRPQAQAIVTTTPKLENFFGNAAVGTSQYQCNAREAMALSLDSMIYNHSPNRESDNQNGINHIQDTSGYQEKTDDIHAQQFSYDSALRNHDMVTEGSRQNQNADYNLQVTNIADDAIPGLKSWVLRNYPGNHAQDSKMVGLAADNFGGESGSISTIGYGDLQSLSLSMSPSSQSSCVTSSQRTSPTVVDSLGDKKRGSESLNPKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYLNEIEEMKNMTRQEYVAHLRRRSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVEKIMASSTLLSGELAKRHREIDIQNEVINHNHNPSTYDEKQEGIGILSHKSCDSQSEWKMAPYQSSQLVDHNHNPTRVDTYRTQSFSMGLDNMIQGHIEDSTNMGCSHMSNPSSLVSSLNNSREGSPDKTNLPMLSGISDVNTNSWAPSPHLRPALSLPQVPVFASWADS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01839 653 SMART rav1_2 317 389 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 SMART rav1_2 419 483 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 PRINTS Ethylene responsive element binding protein signature 318 329 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 PRINTS Ethylene responsive element binding protein signature 459 479 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 Gene3D AP2/ERF domain 419 479 IPR036955 GO:0003700|GO:0006355
Bva11g01839 653 Gene3D AP2/ERF domain 316 385 IPR036955 GO:0003700|GO:0006355
Bva11g01839 653 MobiDBLite consensus disorder prediction 588 619 - -
Bva11g01839 653 SUPERFAMILY DNA-binding domain 316 385 IPR016177 GO:0003677
Bva11g01839 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 12 651 - -
Bva11g01839 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 651 - -
Bva11g01839 653 MobiDBLite consensus disorder prediction 265 295 - -
Bva11g01839 653 SUPERFAMILY DNA-binding domain 418 479 IPR016177 GO:0003677
Bva11g01839 653 CDD AP2 316 383 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 ProSiteProfiles AP2/ERF domain profile. 419 477 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 Pfam AP2 domain 420 469 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 Pfam AP2 domain 317 375 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 CDD AP2 418 479 IPR001471 GO:0003700|GO:0006355
Bva11g01839 653 MobiDBLite consensus disorder prediction 265 284 - -
Bva11g01839 653 ProSiteProfiles AP2/ERF domain profile. 317 383 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01839 Bva-Chr11 16089261 16092882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01839 1 500 AP2-EREBP Transcription Factor Family AT4G37750 53.061 2.53e-157 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva11g01839 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01839 K09285 - qsu:112030198 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00488 08 2527042 2531225 Bva11g01839 11 16089261 16092882 BWGD