LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g01839	ATGAAGTCGATGGAACATGTTGATGCCGATAACAATCAGAATAACTGGTTGGGTTTCTCTCTATCCCCACAGATGAACATGGATGTTTCTTCAGACCTCCATCAACATCATCACACACAGCTGTCCTCTGCTCCTGCTCAACCAGTTCCAGCCAGCTTTTACCACCCTTCAACTTTTGCTAACTATGGCGTTTACTATGGGCTTGAAGGTGAAAATATCAGCTTGTATTCTCATCTCCCTGTAATGCCCATTAAATCTGATGGGTCTCTCTATGTAATGGAAGCTTTGAGCAGGCCACAAGCGCAAGCAATCGTAACTACAACTCCAAAGCTGGAGAATTTCTTTGGCAACGCGGCAGTGGGAACCTCTCAGTATCAATGTAACGCCAGAGAAGCTATGGCACTAAGTTTAGACAGTATGATCTACAACCATTCCCCAAACCGTGAGTCAGACAACCAAAATGGCATAAACCATATCCAAGACACTTCCGGCTATCAAGAAAAAACCGATGATATTCATGCCCAACAGTTCTCATATGACTCTGCCTTAAGAAACCATGATATGGTTACAGAAGGGTCTAGGCAAAATCAAAATGCAGACTATAATCTCCAGGTCACAAATATTGCTGATGATGCAATTCCAGGCCTCAAGAGCTGGGTCTTAAGGAACTACCCAGGTAACCATGCACAGGATTCAAAGATGGTTGGTCTTGCAGCGGATAATTTTGGAGGCGAATCTGGGTCAATTAGTACAATAGGATATGGGGATTTGCAGTCATTGAGCTTGTCCATGAGTCCTAGCTCCCAATCAAGCTGTGTTACAAGTTCACAGCGGACTTCACCTACTGTCGTTGATTCTCTTGGTGATAAGAAAAGGGGATCTGAAAGTTTGAATCCGAAACAAATAGTTCACAGGAAATCCATAGATACATTTGGACAGAGAACCTCTCAATATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAGGCTCATCTGTGGGATAACAGCTGCAAGAAAGAAGGTCAAAGCAGGAAAGGAAGGCAAGTTTATCTAGgggGTTATGATATGGAGGAGAAAGCTGCAAGAGCTTATGATCTGGCTGCACTCAAGTATTGGGGGCCCTCCACTCATATTAATTTCccaTTGGAAAATTATCTAAATGAAATTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTGCGAAGAAGAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTACAGAGGAGTAACAAGACATCATCAACATGGACGCTGGCAAGCTCGAATTGGCAGGGTGGCTGGAAACAAAGATCTATATCTTGGAACGTTTAGTACCCAAGAGGAAGCAGCAGAAGCATACGACATTGCTGCTATAAAATTCCGTGGCTTAAATGCTGTTACCAACTTTGACATTTCAAGATATGATGTGGAAAAGATAATGGCAAGCAGTACCCTTCTCAGTGGCGAACTAGCTAAACGGCACAGGGAGATTGATATCCAAAATGAGGTCATTAACCATAACCATAACCCTTCTACATATGACGAGAAGCAAGAAGGCATTGGCATTCTATCACACAAGAGCTGTGATAGCCAATCAGAGTGGAAGATGGCTCCTTATCAATCGTCTCAACTAGTTGACCACAATCATAATCCAACTAGAGTTGATACTTACAGAACTCAATCCTTCTCAATGGGTTTGGATAATATGATTCAAGGACACATAGAGGACTCAACCAACATGGGTTGTTCGCATATGTCAAATCCTTCTTCCTTGGTATCAAGCTTGAACAACTCAAGAGAAGGTAGCCCGGATAAAACTAACTTGCCGATGCTCTCTGGAATTTCTGACGTCAACACTAACTCTTGGGCCCCATCACCCCATTTGAGGCCTGCACTTTCTTTGCCACAAGTGCCAGTTTTTGCTTCTTGGGCAGATTCATA	1961	0.4284	MKSMEHVDADNNQNNWLGFSLSPQMNMDVSSDLHQHHHTQLSSAPAQPVPASFYHPSTFANYGVYYGLEGENISLYSHLPVMPIKSDGSLYVMEALSRPQAQAIVTTTPKLENFFGNAAVGTSQYQCNAREAMALSLDSMIYNHSPNRESDNQNGINHIQDTSGYQEKTDDIHAQQFSYDSALRNHDMVTEGSRQNQNADYNLQVTNIADDAIPGLKSWVLRNYPGNHAQDSKMVGLAADNFGGESGSISTIGYGDLQSLSLSMSPSSQSSCVTSSQRTSPTVVDSLGDKKRGSESLNPKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYLNEIEEMKNMTRQEYVAHLRRRSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVEKIMASSTLLSGELAKRHREIDIQNEVINHNHNPSTYDEKQEGIGILSHKSCDSQSEWKMAPYQSSQLVDHNHNPTRVDTYRTQSFSMGLDNMIQGHIEDSTNMGCSHMSNPSSLVSSLNNSREGSPDKTNLPMLSGISDVNTNSWAPSPHLRPALSLPQVPVFASWADS	653

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva11g01839	653	SMART	rav1_2	317	389	IPR001471	GO:0003700\|GO:0006355
Bva11g01839	653	SMART	rav1_2	419	483	IPR001471	GO:0003700\|GO:0006355
Bva11g01839	653	PRINTS	Ethylene responsive element binding protein signature	318	329	IPR001471	GO:0003700\|GO:0006355
Bva11g01839	653	PRINTS	Ethylene responsive element binding protein signature	459	479	IPR001471	GO:0003700\|GO:0006355
Bva11g01839	653	Gene3D	AP2/ERF domain	419	479	IPR036955	GO:0003700\|GO:0006355
Bva11g01839	653	Gene3D	AP2/ERF domain	316	385	IPR036955	GO:0003700\|GO:0006355
Bva11g01839	653	MobiDBLite	consensus disorder prediction	588	619	-	-
Bva11g01839	653	SUPERFAMILY	DNA-binding domain	316	385	IPR016177	GO:0003677
Bva11g01839	653	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	12	651	-	-
Bva11g01839	653	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	12	651	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g01839	Bva-Chr11	16089261	16092882	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva11g01839	1	500	AP2-EREBP Transcription Factor Family	AT4G37750	53.061	2.53e-157	462

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Bva11g01839		AP2	1.2e-13	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g01839	K09285		-	qsu:112030198	790.415

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00488	08	2527042	2531225	Bva11g01839	11	16089261	16092882	BWGD

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