Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01817 ATGGGTGCACCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCACTAAAAGCTGGAGTAGTGAAGCATGGGGCAGGGAAATGGCGCACTATACTTACAGACCCAGAGTTCAGCCCTATTTTGAGCACGCGTTCAAATGTGGACCTTAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAAAAGGCAAAGCTTGCACTTAAAAGGAACCTTCCAACCCCCAAAAATGACAACAACCAAATGGCCTTGAGTATTGTTGTTCAAGGTGATAATGACGGTCCCGATACTAAGCCTCTTGCAGTTTCTGGTGGAACATTGCAGCCTGCTAATTCAAAAGAATCTATATCAAGGTTGGATTATCTTATTTTGGAGGCTATTATCAATTTGAAGGAGCCAAAGGGTTCTGACAGGGCTGCCATTGCTGCTTTTGTAGAGGGTCAATACTTGTCTCCAAACCTCAGGAAGTTATTATCAACAAGACTGAAGCATATGGTGGCAATTGGCAAGTTAATCAAGGTAAAACATAAGTACAGGATTGCACAAAGTTCAACTATCTCGGAGAAAAGAAGGTGCTCTCCCCTGTTACAGCTAGAAGGAAGGTCCAAAGACTCTTTAAAAGCAGAAAAGACTGATGTCAACCTCCTGTCGAAATCTGAGATTGATGTAGAGCTATCAAAAATGAAGGACATGACAGCCCAAGAGGCTGCTGCAGCTGCTGCAAAAGCAATTGCAGAGGCAGAAGTTGCCATTGCAGAAGCTGAGGCAGCAGCAAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCCAAGGTGTTTGCAAAAGCAGCAATAAAGGCATTGAAATGCAAAACACTTCATATTTGGTA 884 0.4423 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSPILSTRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPTPKNDNNQMALSIVVQGDNDGPDTKPLAVSGGTLQPANSKESISRLDYLILEAIINLKEPKGSDRAAIAAFVEGQYLSPNLRKLLSTRLKHMVAIGKLIKVKHKYRIAQSSTISEKRRCSPLLQLEGRSKDSLKAEKTDVNLLSKSEIDVELSKMKDMTAQEAAAAAAKAIAEAEVAIAEAEAAAREAEAAEAEAEAAKVFAKAAIKALKCKTLHIW 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01817 294 Gene3D - 2 59 - -
Bva11g01817 294 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Bva11g01817 294 SMART h15plus2 117 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva11g01817 294 SMART sant 4 59 IPR001005 -
Bva11g01817 294 CDD SANT_TRF 6 57 - -
Bva11g01817 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bva11g01817 294 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Bva11g01817 294 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Bva11g01817 294 Coils Coil 241 275 - -
Bva11g01817 294 Gene3D - 116 198 IPR036388 -
Bva11g01817 294 PANTHER MYB TRANSCRIPTION FACTOR 1 293 - -
Bva11g01817 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bva11g01817 294 Pfam linker histone H1 and H5 family 125 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva11g01817 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bva11g01817 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01817 Bva-Chr11 16000147 16004005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01817 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 56.856 7.73e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva11g01817 Linker_histone 4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01817 K09422 - gmx:778165 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00510 08 2616489 2620412 Bva11g01817 11 16000147 16004005 BWGD