Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01806 ATGAAGTACAATCCCAGGGTTTCAAGCTCTCGCCGCAAGAACCGCAAGGCCCATTTCACGGCGCCGTCGAGCGTTCGTCGTGTTCTGATGAGCGCTCCTCTCTCCAACGACCTCCGCTCCAAGTACAACGTGCGGTCCATGCCGGTTCGCAAGGACGATGAGGTTCAGGTTGTCCGCGGTACCTACAAGGGACGCGAGGGCAAGGTTGTCCAGGTCTACCGCCGTAAATGGGTGATTCATATCGAGCGGATCACTCGTGAGAAGGTTAATGGCTCCACTGTAAACGTTGGGATTAACCCATCGAAGGTTCTTATCACCAAGCTGAGATTGGACAAGGACCGAAAGTCCTTGCTTGATCGCAAGGCCAAGGGACGTGCCGCCGCCGAGGACAAGGACAAAGGCACCAAGTTTACAGCTGAAGACATAATGCAAACTGTGGATTA 443 0.5418 MKYNPRVSSSRRKNRKAHFTAPSSVRRVLMSAPLSNDLRSKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVLITKLRLDKDRKSLLDRKAKGRAAAEDKDKGTKFTAEDIMQTVD 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01806 147 SMART kow_9 48 75 IPR005824 -
Bva11g01806 147 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Bva11g01806 147 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Bva11g01806 147 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Bva11g01806 147 Gene3D - 1 144 IPR014722 -
Bva11g01806 147 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Bva11g01806 147 TIGRFAM rplX_A_E: ribosomal protein uL24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Bva11g01806 147 Pfam KOW motif 51 82 IPR005824 -
Bva11g01806 147 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 147 IPR005756 GO:0003735|GO:0006412|GO:0015934
Bva11g01806 147 PANTHER 60S RIBOSOMAL PROTEIN L26-1-LIKE 1 147 - -
Bva11g01806 147 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01806 Bva-Chr11 15961018 15961675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01806 1 147 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 87.755 3.73e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01806 K02898 - tcc:18599319 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01806 11 15961018 15961675 Bva11g01806 11 15961018 15961675 ECH