Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01725 ATGGGGGATATGTACGACTATGATAAAAATACGTGTTCGTCTTCAACCTCTGCTGCTCCTTCGTCGTCATCAACTCaagacgaaatctctctttttctgaATCAAATTCTCCTTCGTTCATCATCACCAGCTCATGTGGGTAAAAACGCACAGAGCCTGATGTCGTCCACATCTGTTGCCGAACTCTGCAGCAGGAACGCTGCGCAGGGAAATGTACATTCTTTATATGATAGATCACCACTACGCCTAGATGGGATCTCGACCGTTGATTCCATGGCTGGGTTAAGCACTTCAAGTGGtgcttttctctcttcttcggGTACTTACAGTTCGGCCTATATGAAGAGAAGTTGTGCTGCAAATGTGTCTTCATCGTCAGTTGGAGCGAGTGAGAATGAGACTCACGAGAATGATTGCGAAAGCGAGGAGGGCATCGATGCATTGTCGGATGAGGTACCGGCAAAAGCTGTGCCTCCACGGAGTTCGTCCAAGAAAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGGAGAAGGAGTAGAATCAATGAGAAACTGAAGGCACTGCAAAATCTGATTCCAAATTCTAACAAGACGGACAAGGCTTCGATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGATCGAGTCTGCATCCTATGTGCTTCCCCGAAGCCTTGCAGCCTCTGCAGTTGTCCCAAATGAGGATGGAGTTCGGTGAAGAAAATAGTGGTGTGCCTTTAAGCATGGCAGCTACTCTGCCTTTGCACCAAGAAAACCCCTTGCACTATGGATGCGGTCTACCTAACAAACGCACTGTCCCAGACCAACCATCAGTGCCACCTCCATCATATACAATGAACTCAGAAACCTCTTTCGGGTTGGAACCCCCGATCCTAGCGCATCTAAGCCCCTTTCATCTAAAAAGATCTTTTGAGGAGACGTGTTGGGAAGATACATTCCAACATGCAAACCATTCGGATACCAATCCATCAGGTGTTTCCCGAGGATTTGAGACTGGCACGACGGCTACAGTATCAGTCTCATTTGATATGCAACCATCCGAACTGATGGACAATGGCTCATTGGAGACCTGCATCACAGGAAAAGATCAATCAAAAGTCATTCTGAGAAATATTGAGCACAACCTTAATACCTTCTCGCAGTTAAAGTA 1214 0.4456 MGDMYDYDKNTCSSSTSAAPSSSSTQDEISLFLNQILLRSSSPAHVGKNAQSLMSSTSVAELCSRNAAQGNVHSLYDRSPLRLDGISTVDSMAGLSTSSGAFLSSSGTYSSAYMKRSCAANVSSSSVGASENETHENDCESEEGIDALSDEVPAKAVPPRSSSKKSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGSSLHPMCFPEALQPLQLSQMRMEFGEENSGVPLSMAATLPLHQENPLHYGCGLPNKRTVPDQPSVPPPSYTMNSETSFGLEPPILAHLSPFHLKRSFEETCWEDTFQHANHSDTNPSGVSRGFETGTTATVSVSFDMQPSELMDNGSLETCITGKDQSKVILRNIEHNLNTFSQLK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01725 404 Coils Coil 206 226 - -
Bva11g01725 404 PANTHER TRANSCRIPTION FACTOR SPATULA 21 341 - -
Bva11g01725 404 MobiDBLite consensus disorder prediction 8 24 - -
Bva11g01725 404 CDD bHLH_AtPIF_like 167 228 - -
Bva11g01725 404 MobiDBLite consensus disorder prediction 165 182 - -
Bva11g01725 404 MobiDBLite consensus disorder prediction 1 24 - -
Bva11g01725 404 SMART finulus 173 222 IPR011598 GO:0046983
Bva11g01725 404 MobiDBLite consensus disorder prediction 125 182 - -
Bva11g01725 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 227 IPR036638 GO:0046983
Bva11g01725 404 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 341 IPR031066 -
Bva11g01725 404 Pfam Helix-loop-helix DNA-binding domain 171 217 IPR011598 GO:0046983
Bva11g01725 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Bva11g01725 404 Gene3D - 162 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01725 Bva-Chr11 15510395 15513421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01725 24 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 42.899 2.50e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva11g01725 HLH 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01725 - - jre:109009094 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00593 08 3076016 3079601 Bva11g01725 11 15510395 15513421 BWGD
Bva11g01725 11 15510395 15513421 Bva11g01725 11 15510395 15513421 ECH