Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01723 ATGGCTGATGAACAGCACGAAACGACGGGGAGGCGAAGGGGCAGGGGATCAGAGGCCTTGGCTCGATCTGAAGCCTTGGAACGCCTGAAAGCTCTTCGCGGTGGTAGGCGCCGTTCGGATGGCGGCGGATTTCAAATTAAACTGGAAAACCCTATTTATGACACTGTCGCTGAGGACGAGTATGACGCTCTTGTAGTCAAGCGCCGAGAGGAGTCCCGAGGATTTATCGTTGACGATGACGGTCTTGGATACGGGGACGAAGGTGAGGAAGAGGACTGGTCCAAAGCCGGATTCACTCTTTCGTCCGATGAATCAGAAGGTGAATCAGTGAGGCCGAAAAGGAAGAAGGTGGAAAAGAAAGATCCGCAACCTAAGAAgtcctcttcttctctctcgGCTGCGGCAGCGATGATTGGGGCGCAGAGGTTATCATCGATGTTCACCTCGTCGGTTTTTAAGAAGACTAGAGACGATAAGGTTAAAGGATTTTCCTGCGACAGTATCGTGGATGATGTTATTGCGGAGTTTGCACCAGATGAGACTGATAGACAAAGGCGTAGAAGAGTTCAAGCGAATTCCATATCTGGTACGAATAACGTTGTTCCAATTAATACCGTTAATACTGAGATACCGCGTCCCGATTTGATGTCCAGTTCGTTACTGTCGGATGTTGCTGACACGAAACTTGAATCGACTAGGGTTTTGAAAGATGATGGTTGTGCGTTGAATTTAGAGCAAATCAATGAATCAGCTAGAGAAAATGCTGTTGTTAAAGAACCAGAGGATGGACTACTTATCGATTCTGAAAATGTCCAGCCATCAGTTATGCAATCAAATAATTCTCCAACTAAAGGAGATGTAATCGAGGAGAAAATGCTCAATGAGGTTAGAACAGAAACAAAACTAGCAAAGAAGGAGGTATTTACTTtgaatgcaaaaattaaagaggagGATCCAGCACTGAGTGCAACTGCAGGTTGGCAGGCAACTAAGAATGGAGGGGATATTAATGACGGTGATTTGAAAGTGGCCAGCTATGCTTCAAACCGTGAAGAGAATTCAGATTTTAATCTGGACGCAGATGGGTCGCTGCCATTCTACATACTTGATGCCCACGAGGAGTTCTATGGAGCCAATGCGGGCACCTTGTATTTGTTTGGCAAGGTCAAAGCAGGGGATTCGTATCAGAGCTGCTGTGTTGTCGTGAAGAACATGAAGAGGTGTGTCTATGCAATTCCAAACCGTCCTTTGCTTTACACTGATGAGATGATAAAGCTTAAGAAAGAAGTTAAAGAGTCGCGAATCTCTTCTACAGATTTCAATAAAAAGCTGCAaGATTTGGTGTCTGGTTTAAAGAGTGAGATAGCAAAACAGCTGTTAGATCTGAACGTTTCAACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGATCTGAAATACCTTCCGGTGAACATTATGTGTTGAAGATTAATTATCCATTCAAGGATCCACCCCTTCCGGTCGACCTCAAAGGAGAAAGTTTTTGTGGTCTCCTAGGAACTCATTGCAGTGCGTTGGaactttttcttatcaaaagaaagataaagggGCCTTCGTGGCTACAGGTTTCGAACTTTTCTGCCAGCTCAGCTTCTCAAAGGGTGAGCTGGTGCAAATTTGAAGTGACTGTTAACTCGCCCAAGGACATACTCCTTTCTTCAACTAACTCAAGGATTAGTTTTGAGATTCCACCTGTCGTTGTCACTGCCGTAAATTTGAAAACCACCATAAATGATAAGCAAAATACAAATGAGATTGTCTCTGCATCCATTGTCTGCTGCCATAGGGTTAAGATTGACACTCCCATGTTGGCTTCTGAATGGAGGAGACCTGGAATGCTTACCCATTTTACTGTTGTTCGTAAGCTTGATGGAGGCATATTTCCACTTGGATTTAATAAGGAGGCTTCAGACAGAAACTCAAAAGCTGGGTCAAATGTTCTGCGTGTTGAAGTCAGTGAGAGGGCTTTGTTACACTGCCTATTGGTAGAACTACACAAGTTAGATAGTGATATTCTTGTTGGACATAACATTTCTGGGTTTGACTTGGATGTTCTTCTCCACAGATCCCAGGCCTGCAAAGTTCAGAGCAACATGTGGTCCAAAATAGGTCGTCTCAAGCGTTCTGTGATGCCTAAGCTCGCTAGAGGAAGCACTATTTTTGGTTCTGGAGCAAGTCCTGGGATCATGTCTTGCATTGCGGGTCGTCTTCTTTGTGATACATATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAACTGAACTTGCAAAGACTCAGCTGAATAAAGTACGTAAGGAAGTTGCGCCTCACGATGTCCAGAAAAAATTCCAATCGGCGGAATCCCTTATGGAACTTATTGAATATGGCGAGACGGATGCGTGGTTGTCAATGGAACTTATGTTTCATTTGAGTGTTCTTCCCCTGACACGTCAGCTGACAAATATTAGTGGTAACCTATGGGGAAAAACTCTTCAGGGCGCAAGGGCACAGAGAGTGGAGTATCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATTGTACCGGACAAGACTCCACCCCGCGTAAACCAAGCAAAATTGACGAAACGAAGAATAACTGTTGGTGCTGAGGATAGCAACTTAGATGAAGCAGATATTGATGATACAAATTATGATATTGATGCTCCTGACAGTGAtcataagaaaaggaaaaaggccCCTTCCTATGCCGGGGGATTGGTCTTGGAGCCAAAGAAGGGTTTAtatgacaaatatatattactactGGACTTCAACAGTCTTTATCCTTCTATTATTCAGgaatataatatatgcttCACAACTGTTGAAAGATCTTCAGATGGATCTTTTCCTCGTTTACCATCTAGCAAAGAACCTGGAGTGTTGCCAAAGTTGCTGAAACATCTGGTTGAAAGGAGGAGAAACGTAAAGCATTGGATGAAAAATGCATCTGGTCTCAAATTTCAGCAATTGGACATTCAGCAGCAAGCGCTAAAGCTTACTGCAAACAGTATGTACGGATGTCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCCCTAGCAGAGCTTATAACCACACAAGGAAGGGAGATATTACAGAGTACCGTTGATCTTGTTCAGATTAACCTGAACTTAGAGGTGATATATGGTGACACTGATTCAATAATGATTTACAGTGGCCTAGATGATATTGAGAAAGCAAAACTAATGGCTGGAAAAGTCATTCAGGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTGGATGGTTTGTACAAGAGAATGCTACttcttaagaaaaagaaatatgcagCTATCAAGGTGCAGTACAAAGATGGGATGCCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCTTATTATCTAAAGAATTAGGAGACTTTTGTCTAAGTCAAATTTTGTCTGGAGGGTCATGCGATGATGTCGTTGAATCGATTCATAGCTCTCTCATGAAGGTACAAGAGGAAATGAGGAGTGGACAAGTACCactggaaaaatatatcatcaCGAAGACATTGACTAAACCTCCCGAAGCCTATCCAGATGCCAAAAACCAACCGCATGTTCTCGTGGCACAAAGACTGAAGCAAGATGGTTACTCCACTGGTTGCTCCGTTGGCGATACAATCCCTTATATAATTTGCTATGAGCAGGGAAGTAGTTCAGGCAGTTCGACCGGCATTGCACAGCGTGCTAGACATCCTGATGAACTTAAACGAGAACAAGGGAAATGGATGATTGACATTGACTACTACTTGTCACAACAGATTCATCCTGTGGTATCACGACTTTGTGCATCAATTCAGGGGACGAGCTCAGAAAGACTGGCTGATTGTTTAGGGCTTGATTCATCAAAGTTTCAACATAAATCGAGTGAAGTATCCAAAACTGATCCTTCAAGGTCATTCTTGTTTGCTGCTGACGATGAGGAGAGGTATCGGGGATGTGAACCGTTGGTGTTGTCATGTCCGAGCTGTTCTGGCACGTTTGAATGTCCGTCTGTTTTCGAATCTCTTTGCTTGTTAGGAAGTGAAAAGCAAACAAACTTAGACATAAAGGAATCCAACCACAACTTTTGGCGTAAGCTGCGCTGTCCTAAATGCTCAGACGAAAATGATGCCAGTAGAATTTCTCCTGCAATGATAGCCAATCagGTCAAAAGGCAGGCGGACAAATTTGTTTCGATGTATTACAGGGGCCTACTAATGTGTGATGATGAAACATGTAAGCATACAACACGTAGTATCAATCTTCGGTTGGTTGGCGATTATGAGAGAGGCACTGTTTGTCCAAATTATCCTCGCTGCAATGGACGTCTCGTAAGAAAGTACACGGAGGCAGACTTGTACAAGCAACTCTCATATTTTTGCTACCTATTGGATACTGTTTGCTGTATAGAAAAGATGGAGGCTAAATCTAAGATACCACTGGAGAGAGAGTTGAGCAAAATTAGGCCTATGGTTGATCTGGCGGCATCAACAGTACAAAGGATTCGGGACCGTTGTGCATATGGATGGGTGCAGTTGCAGGACCTCGTGGTTACTTTTTG 4655 0.4185 MADEQHETTGRRRGRGSEALARSEALERLKALRGGRRRSDGGGFQIKLENPIYDTVAEDEYDALVVKRREESRGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESEGESVRPKRKKVEKKDPQPKKSSSSLSAAAAMIGAQRLSSMFTSSVFKKTRDDKVKGFSCDSIVDDVIAEFAPDETDRQRRRRVQANSISGTNNVVPINTVNTEIPRPDLMSSSLLSDVADTKLESTRVLKDDGCALNLEQINESARENAVVKEPEDGLLIDSENVQPSVMQSNNSPTKGDVIEEKMLNEVRTETKLAKKEVFTLNAKIKEEDPALSATAGWQATKNGGDINDGDLKVASYASNREENSDFNLDADGSLPFYILDAHEEFYGANAGTLYLFGKVKAGDSYQSCCVVVKNMKRCVYAIPNRPLLYTDEMIKLKKEVKESRISSTDFNKKLQDLVSGLKSEIAKQLLDLNVSTFSMAPVKRKYAFERSEIPSGEHYVLKINYPFKDPPLPVDLKGESFCGLLGTHCSALELFLIKRKIKGPSWLQVSNFSASSASQRVSWCKFEVTVNSPKDILLSSTNSRISFEIPPVVVTAVNLKTTINDKQNTNEIVSASIVCCHRVKIDTPMLASEWRRPGMLTHFTVVRKLDGGIFPLGFNKEASDRNSKAGSNVLRVEVSERALLHCLLVELHKLDSDILVGHNISGFDLDVLLHRSQACKVQSNMWSKIGRLKRSVMPKLARGSTIFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELAKTQLNKVRKEVAPHDVQKKFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKTPPRVNQAKLTKRRITVGAEDSNLDEADIDDTNYDIDAPDSDHKKRKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKEPGVLPKLLKHLVERRRNVKHWMKNASGLKFQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITTQGREILQSTVDLVQINLNLEVIYGDTDSIMIYSGLDDIEKAKLMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAIKVQYKDGMPYEVIERKGLDIVRRDWSLLSKELGDFCLSQILSGGSCDDVVESIHSSLMKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQDGYSTGCSVGDTIPYIICYEQGSSSGSSTGIAQRARHPDELKREQGKWMIDIDYYLSQQIHPVVSRLCASIQGTSSERLADCLGLDSSKFQHKSSEVSKTDPSRSFLFAADDEERYRGCEPLVLSCPSCSGTFECPSVFESLCLLGSEKQTNLDIKESNHNFWRKLRCPKCSDENDASRISPAMIANQVKRQADKFVSMYYRGLLMCDDETCKHTTRSINLRLVGDYERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCYLLDTVCCIEKMEAKSKIPLERELSKIRPMVDLAASTVQRIRDRCAYGWVQLQDLVVTF 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01723 1551 TIGRFAM pol2: DNA polymerase (pol2) 51 1300 - -
Bva11g01723 1551 Gene3D - 406 532 - -
Bva11g01723 1551 Pfam DNA polymerase family B, exonuclease domain 394 774 IPR006133 -
Bva11g01723 1551 Pfam DNA polymerase family B 839 1302 IPR006134 GO:0000166|GO:0003677
Bva11g01723 1551 Gene3D Palm domain of DNA polymerase 908 1133 IPR023211 -
Bva11g01723 1551 CDD POLBc_alpha 914 1318 IPR045846 GO:0003887|GO:1902975
Bva11g01723 1551 ProSitePatterns DNA polymerase family B signature. 1070 1078 IPR017964 GO:0000166|GO:0003676
Bva11g01723 1551 MobiDBLite consensus disorder prediction 106 125 - -
Bva11g01723 1551 Coils Coil 1096 1116 - -
Bva11g01723 1551 SMART polmehr3 580 1082 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva11g01723 1551 Gene3D - 1146 1332 IPR042087 -
Bva11g01723 1551 MobiDBLite consensus disorder prediction 1 20 - -
Bva11g01723 1551 Gene3D DNA Polymerase alpha, zinc finger 1341 1536 IPR038256 -
Bva11g01723 1551 PANTHER DNA POLYMERASE 337 1548 - -
Bva11g01723 1551 CDD DNA_polB_alpha_exo 580 831 - -
Bva11g01723 1551 Gene3D - 366 565 - -
Bva11g01723 1551 SUPERFAMILY DNA/RNA polymerases 864 1318 IPR043502 -
Bva11g01723 1551 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Bva11g01723 1551 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 337 1548 - -
Bva11g01723 1551 Pfam DNA Polymerase alpha zinc finger 1342 1547 IPR015088 GO:0003887|GO:0006260
Bva11g01723 1551 Gene3D - 580 894 IPR036397 GO:0003676
Bva11g01723 1551 PRINTS DNA-directed DNA-polymerase family B signature 1068 1076 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva11g01723 1551 PRINTS DNA-directed DNA-polymerase family B signature 939 952 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva11g01723 1551 PRINTS DNA-directed DNA-polymerase family B signature 1015 1027 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva11g01723 1551 MobiDBLite consensus disorder prediction 900 920 - -
Bva11g01723 1551 Gene3D Helix hairpin bin 978 1029 - -
Bva11g01723 1551 MobiDBLite consensus disorder prediction 76 133 - -
Bva11g01723 1551 SUPERFAMILY Ribonuclease H-like 361 868 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01723 Bva-Chr11 15489162 15500702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01723 1 1549 Core DNA Replication Machinery Family AT5G67100 61.789 0.0 1917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01723 K02320 - zju:107424534 2222.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01723 11 15489162 15500702 Bva11g01723 11 15489162 15500702 ECH