Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01716 ATGGAGCAGCGAAAGCTTGTGGTTCTGGGTATTCCCTGGGAAGTCGATACTGAGGGTTTGAGGGAATATATGAGCAAATTTGGCGAATTGGAAGATTGCATCGTAATGAAGGAGCGGTCAACTGGTCGGTCTCGTGGTTTTGGATATGTTACATTCGCATCTGTCGATGATGCTAAGAATGCATTATCAAGTGAACACGTTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCGCCAGTCAAAAAGGTAACCAGAATTTTTGTGGCTAGAATTCCACCATCTGTAACAGAAGCAACTTTTAGAAGtcattttgagaaatatggTGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAAATGCATCGTGGAATCGGTTTTGTCACTTATGCAAGTGCAGAATCTGTAGAGAATTTAATGACAGAAACGCATGAACTGGGAGGTTCTACTGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGACTTCAAACCAGTTGGCAGAATGCCACAGGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACTAGATATGCGGCACTTGGTGCTCCAACTTTGTATGACCATCCAGGCTCAATCTATGGAAGGGGAGAACCTGCTCGTGGAATGGgtaaaaagatttttgttGGCCGTCTTCCCCCAGAGGCAACAGTTGAGGATCTTCGTCAGTATTTTGGCAGATTTGGCCGTATTTTAGATGTTTATGTTCCCAGGGATCCTAAGAGAACAGGCCATAgaggttttggttttgtaacTTTTGCTGAAGATGGTGTGGCAGATCGTGTCTCCCGAAGGTCTCATGAGATTTGTGGACATCagGTCGCAATAGATTCGGCCACACCTCTTGATGATGCTGGGCCCAGTGGAAACTTTATGATGAATGCTGTAGATTCTTTTCCGGGATATGGTGGTCCTATGCGAACATATGGGAGGATGTATGGCAGccttgattttgatgatTGGGGTTATGGAATTAGTAGTGGAAGACCCTCGAGAGCTGATTGGAGGTACAGGCCATACTA 1079 0.4291 MEQRKLVVLGIPWEVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKNALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFVTYASAESVENLMTETHELGGSTVVVDRATPKEDDFKPVGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGSIYGRGEPARGMGKKIFVGRLPPEATVEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPSGNFMMNAVDSFPGYGGPMRTYGRMYGSLDFDDWGYGISSGRPSRADWRYRPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01716 359 Gene3D - 222 304 IPR012677 -
Bva11g01716 359 PANTHER OS01G0945800 PROTEIN 3 359 - -
Bva11g01716 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Bva11g01716 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 359 - -
Bva11g01716 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Bva11g01716 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 151 IPR000504 GO:0003723
Bva11g01716 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Bva11g01716 359 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Bva11g01716 359 Gene3D - 87 174 IPR012677 -
Bva11g01716 359 Gene3D - 1 86 IPR012677 -
Bva11g01716 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Bva11g01716 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
Bva11g01716 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Bva11g01716 359 SUPERFAMILY RNA-binding domain, RBD 224 323 IPR035979 GO:0003676
Bva11g01716 359 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Bva11g01716 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Bva11g01716 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01716 Bva-Chr11 15456644 15461348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01716 5 293 Eukaryotic Initiation Factors Gene Family AT2G23350 27.090 5.03e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01716 K14411 - gmx:100795240 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01716 11 15456644 15461348 Bva11g01716 11 15456644 15461348 ECH