Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01710 atgtcGCAGCGGTCGATGCCGGCGCCGTTTCTGATGAAGACCTACCAGTTGGTGGATGATCCTGCCACCGACGATGTGATATCGTGGAGTGAAAGCGGCAACACTTTTGTGGTGTGGAAGCATGCGGATTTTGCAAAGGACTTGCTTCCCAAGTACTTCAAGCACAACAATTTCTCAAGCTTTGTCCGCCAGCTTAACACTTATggATTCAGAAAGATTGTTCCTGACAAATGGGAATTTGCGAACGAGTATTTCAAGCGTGGACAGAAGGAGCTGCTTTCTGAAATCAAACGGCGTAAAACCGTTGGACAAGCATCGGCACAGGTGTCCGGGACGGGAAAATCCGGGGGCGGTGGTAACTCTGCATCAAACTCGGGGGGTGATGACATGGGGTCGACGTCAACTTCGTCCCCTGATTCGAAGAACCAGGGATCGGTGGAGACAATGACAACTCAGTATGCGGAGTTATCAGGTAAAAACGAGAAACTGAAAAAGGATAACGAAATGCTGAGCACGGAGCTGGCGCAAGCGAAGAAGCAGTGCGATGAGCTGATACATTTCCTGAAAGATTATCTGAAGGTGGGGCCCGATCAGATCAATCGGATCATGCGACAAGGAACTAGTGGGTCCAGCCGCGATGAATTGGTCGGTCCAGTGCCCAGTCTTACTGTAgatggtgatgatgatgaaaacGCGCGCGCGGGAGGTGATGAGATTGAGATTGAGAAGGAAGGTggagaaaattataaactgTTTGGGGTTTGGTTGAAAGCAGCGAAGGGGGGCGATGGAGATGGCgaggagaaaatgaaaatctccAACAAGAGAAGGCGTCTTGACCAAATGGGCTTTAGTGGGCCTAACCCTCACCCTAAGGAGTTTAAGGCTGTTCCCGTGAACGCCATGATCAAGAGTAGCAAGGTCTGCAACTA 932 0.4732 MSQRSMPAPFLMKTYQLVDDPATDDVISWSESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLSEIKRRKTVGQASAQVSGTGKSGGGGNSASNSGGDDMGSTSTSSPDSKNQGSVETMTTQYAELSGKNEKLKKDNEMLSTELAQAKKQCDELIHFLKDYLKVGPDQINRIMRQGTSGSSRDELVGPVPSLTVDGDDDENARAGGDEIEIEKEGGENYKLFGVWLKAAKGGDGDGEEKMKISNKRRRLDQMGFSGPNPHPKEFKAVPVNAMIKSSKVCN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01710 310 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01710 310 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01710 310 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01710 310 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01710 310 MobiDBLite consensus disorder prediction 261 294 - -
Bva11g01710 310 MobiDBLite consensus disorder prediction 205 233 - -
Bva11g01710 310 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Bva11g01710 310 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 310 IPR027725 -
Bva11g01710 310 MobiDBLite consensus disorder prediction 103 149 - -
Bva11g01710 310 Coils Coil 146 180 - -
Bva11g01710 310 MobiDBLite consensus disorder prediction 261 278 - -
Bva11g01710 310 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 310 - -
Bva11g01710 310 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01710 310 Gene3D - 2 101 IPR036388 -
Bva11g01710 310 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01710 Bva-Chr11 15422079 15424498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01710 2 310 HSF AT4G36990 50.479 1.14e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva11g01710 HSF_DNA-bind 2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01710 K09419 - vvi:100247320 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00612 08 3172506 3175160 Bva11g01710 11 15422079 15424498 BWGD
Bva11g01710 11 15422079 15424498 Bva11g01710 11 15422079 15424498 ECH