Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01649 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCCaaccataaaatttatggaggACAATATCATGGGAAATATGGAGATGACCGAATTGGGGATAATCATAATATTTCTACGGATGAATTAACGGATATCGAGAGAGAAGAGATTGATCGTGCAATTGCACTTTCTCTATCAGAGGAGGaccagaaagggaaaaaagttATTGAGGATGAATCTCAGTCAGAAGATGAAGAACTTTGCCAAATTGAAGAGGAGGAAGATGAACATCTTGCTAAAGTTCGGGATGAGGAAGATGAAGTTGATGAACATCCTGCTAAAGTTCAACAGGAGGAAGATGACCATCTTGCTAACGTTCAACTTGAAGAAGATGAACAGCTTGCTAGAGCAATTCAAGAAAGTTTAAACATGGACTCTCCTCCTCGACATGACTCTGGCTCTATATTTCAACCTTATCCACTGCAATTTCCACCTGGATACAGGATCTGTGCTGGATGCAACACTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGCGGTCTGGCATCCAGAATGTTTCCGCTGCCATGCTTGTAATCTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCCTTATCATAAATCCTGCTATAGGGAGCAGAATCACCCAAGGTGTGATGTTTGCAAGAACTTTATCCCTACAAATTCAGCCGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAGAAATACTGTCCATCGCATGAGCGTGATGGCACTCCTCGATGTTGTAGCTGTGAACGAATGGAGCCAAGGGACACGAAATATCTTTTGCTCGATGATGGTCGAAAGCTATGCCTAGAATGTCTGGACTCTTCAATTATGGATACTCATGAATGCCAGCCTCTTTACCTCGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAGATTCCCATGCTTCTGGTTGAGAGACAAGCACTAAATGAGGCCatggaaggagaaaaaaatGGTCATCACCACTTACCAGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAGACGGTCACCACTATTTTAAAGAGGCCGAAGATAGGAGCAGGGTACCGGGTCATAGACATGATAACCGAGCCTTACAGGCTGATCCGACAGTGTGAAGTGACTGCCATTCTTGTCTTGTATGGCCTTCCTAGgtTATTAACGGGATCAATCCTGGCTCATGAGATGATGCATGGTTGGCTCAGGCTTAAAGGTTATCCCAATCTGAGTCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCACATGTGGTTAGACTCAGAGATATATACTGGATCCGGTAATGATGGtgcatcatcttcttcttcatcctccTCTTCCACCTCATCAAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAACTTggtgaattttttaaacaccAGATCGAGTCAGATACCTCATCAGCGTATGGAGATGGATTCAGATTGGGTAACCAAGCTACGCTCAAGTATGGGCTCCGAAGGACCCTCGACCATATTCGGATGACAGGAAGTTTTCCATTGTA 1574 0.4117 MGWFTKLLKGSNHKIYGGQYHGKYGDDRIGDNHNISTDELTDIEREEIDRAIALSLSEEDQKGKKVIEDESQSEDEELCQIEEEEDEHLAKVRDEEDEVDEHPAKVQQEEDDHLANVQLEEDEQLARAIQESLNMDSPPRHDSGSIFQPYPLQFPPGYRICAGCNTEIGHGRFLSCMGAVWHPECFRCHACNLPITDYEFSMSGNRPYHKSCYREQNHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILKRPKIGAGYRVIDMITEPYRLIRQCEVTAILVLYGLPRLLTGSILAHEMMHGWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYTGSGNDGASSSSSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQATLKYGLRRTLDHIRMTGSFPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01649 524 Pfam Protein DA1 310 519 IPR022087 -
Bva11g01649 524 CDD LIM_DA1 161 213 - -
Bva11g01649 524 SMART lim_4 160 212 IPR001781 -
Bva11g01649 524 MobiDBLite consensus disorder prediction 448 470 - -
Bva11g01649 524 MobiDBLite consensus disorder prediction 448 466 - -
Bva11g01649 524 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 120 139 IPR003903 -
Bva11g01649 524 Pfam LIM domain 161 215 IPR001781 -
Bva11g01649 524 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 523 - -
Bva11g01649 524 Coils Coil 67 87 - -
Bva11g01649 524 MobiDBLite consensus disorder prediction 91 110 - -
Bva11g01649 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 242 - -
Bva11g01649 524 SMART uim 43 62 IPR003903 -
Bva11g01649 524 SMART uim 120 139 IPR003903 -
Bva11g01649 524 ProSitePatterns LIM zinc-binding domain signature. 161 195 IPR001781 -
Bva11g01649 524 PANTHER PROTEIN DA1-RELATED 2 1 523 IPR045218 -
Bva11g01649 524 Gene3D Cysteine Rich Protein 155 218 - -
Bva11g01649 524 ProSiteProfiles LIM domain profile. 159 219 IPR001781 -
Bva11g01649 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01649 Bva-Chr11 15071782 15076760 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva11g01649 DA1-like 4.2e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01649 - - gmx:100817969 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00684 08 3543065 3548268 Bva11g01649 11 15071782 15076760 BWGD