Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01642 ATGGCGAGTGGGTCCGGGGAATCAACGAGCGTTCCTCCACAAAGCTCAAGTTGCTCATCAAATGGTTCTAACGATACTGGTGACTTTGAGTGCAACATCTGCTTTGAATTAGCTCAAGACCCAGTTATCACGCTGTGTGGTCATCTCTTTTGTTGGCCATGCCTCTATAGATGGCTTCATCATCACTCACAGTCCCAAGAATGCCCTGTTTGTAAGGCTCTGATACAAGAGGAAAAATTGGTTCCACTGTATGGGAGGGGCAAAGTACAAAATGATCCGAGGACCAAATCATATCCCGGAATGGAAATTCCCCACCGTCCCACGGCGCAGAGACCTGAAACAGCACCTCCTCCCCAACAAAATCCATTTGGGAATTATGGGTTTGGCTTTATGGGAGGATTCATACCCACCGCAACTTCCAGGATTGGAAACTTAACTCTTTCTTCAGCTTTTGGTGGTTTTATCCCATCTCTGCTGCACACTCAGTTCCATGGCTTCCAAGATGCCACCGTCTATGGAACTACTTCTGGTTATCCAGTTGGGTTCAACTCATTTTATGGATGGAACGTACACGGTTATCCTCGGCCAGCTGGTCATAGGCCAAGGCACGATGACAATGTTTTGAAGAATCTGCTTATGCTGATTGGTGTGCTTGTTCTCCTAGCACTCATTTTTGGGTA 680 0.4691 MASGSGESTSVPPQSSSCSSNGSNDTGDFECNICFELAQDPVITLCGHLFCWPCLYRWLHHHSQSQECPVCKALIQEEKLVPLYGRGKVQNDPRTKSYPGMEIPHRPTAQRPETAPPPQQNPFGNYGFGFMGGFIPTATSRIGNLTLSSAFGGFIPSLLHTQFHGFQDATVYGTTSGYPVGFNSFYGWNVHGYPRPAGHRPRHDDNVLKNLLMLIGVLVLLALIFG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01642 226 SUPERFAMILY RING/U-box 27 84 - -
Bva11g01642 226 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 225 - -
Bva11g01642 226 MobiDBLite consensus disorder prediction 1 21 - -
Bva11g01642 226 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Bva11g01642 226 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Bva11g01642 226 MobiDBLite consensus disorder prediction 91 119 - -
Bva11g01642 226 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Bva11g01642 226 CDD RING-HC_AtRMA_like 29 73 - -
Bva11g01642 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva11g01642 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 95 IPR013083 -
Bva11g01642 226 SMART ring_2 31 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01642 Bva-Chr11 15043797 15045087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01642 20 225 C3H Transcription Factor Family AT2G23780 59.346 2.37e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01642 K10666 - mnt:21392517 334.339