Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01624 ATGACGACTCGAATAGCGCCGGGAGTAGGAGCAAACTTGCTGGGGCAACACTCAGCAGAGAGGAACCAAGATGCTACTGCTTATGTCGGCAATCTCGATCCCCAGGTTTCTGAGGAGTTACTATGGGAGCTATTTGTCCAGGCTGGTCCAGTTGttAATGTATATGTTCCAAAGGATAGAGTGACCAACCAACATCAAGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCAATCAAGGTTCTTAACATGATTAAACTTTATGGGAAACCTATACGTGTAAACAAGGCATCTCAAGATAAAAAGGGCTTGGATGTGGGGGCTAATCTTTTCATAGGAAACCTTGATCCTGATGTAGATGAGAAGCTACTCTATGATACTTTCAGTGCATTTGGAGTCATCGTTACAAATCCGAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTTATTAGCTATGATTCATTTGAGGCATCTGATGCAGCTATTGAGGCAATGAATGGACAATATCTATGCAATCGTCAGATAACAGTTTCATATGCATATAAGAAAGACACTAAAGGGGAAAGGCATGGAACTCCAGCAGAGAGGGTTTTGGCTGCAAGCAATCCAACTGCACAGAGGAGCAGGCCGCACACTTTATTTGCCAGCGGACCTCCAACACTTCCCAATGTTCCTCAGGCAAATGGTGCCATCACTGCCCCTGCCCCTCCTCGGCCCTTCGCAAACGGAGTGGCTCCTCCTGCTATTCCTGCCTTCCGTCCACCACCCCCTCAAGGTGCACCATTTCCCCCTATGGCTGGGCAACCTGCATGGCATCAACAGCAATCTGGTCAACCAATGCCGCCGCCTCCCCTCCAGCAGTTTAGACCACCTCAGTCGGGTATGCCACCACCCCCTCCACAGTCTGTTCCGGTTCCTCTCAGGCCTCTGCCACCGCCGACAGTACTGGCAGGCCAACCACCACCTATGTGGCAACAACCACCACCACCTCCTCACCTCCAACAAGGTATGAGGCACCCAATGCCACCGCCTCCTCAAAATCATCCACCTCCACCTCCTTCAAGTTG 1094 0.4973 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKGLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQRSRPHTLFASGPPTLPNVPQANGAITAPAPPRPFANGVAPPAIPAFRPPPPQGAPFPPMAGQPAWHQQQSGQPMPPPPLQQFRPPQSGMPPPPPQSVPVPLRPLPPPTVLAGQPPPMWQQPPPPPHLQQGMRHPMPPPPQNHPPPPPSS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01624 364 CDD RRM2_SF3B4 111 193 IPR034159 -
Bva11g01624 364 CDD RRM1_SF3B4 28 100 IPR034158 -
Bva11g01624 364 MobiDBLite consensus disorder prediction 248 273 - -
Bva11g01624 364 MobiDBLite consensus disorder prediction 193 364 - -
Bva11g01624 364 Gene3D - 16 110 IPR012677 -
Bva11g01624 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Bva11g01624 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Bva11g01624 364 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Bva11g01624 364 SMART rrm1_1 26 99 IPR000504 GO:0003723
Bva11g01624 364 SMART rrm1_1 113 187 IPR000504 GO:0003723
Bva11g01624 364 MobiDBLite consensus disorder prediction 285 364 - -
Bva11g01624 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Bva11g01624 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Bva11g01624 364 Gene3D - 111 200 IPR012677 -
Bva11g01624 364 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 353 - -
Bva11g01624 364 PANTHER TRANSFORMER-2-RELATED 1 353 - -
Bva11g01624 364 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01624 Bva-Chr11 14944421 14948808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01624 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 34.940 7.97e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01624 K12831 - gmx:100792707 511.916