Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01616 ATGGGAGACTACAATGATGCATTCATGCGCAACCAAAACGCCGCAGTTCAGGCCCGTACCAAAGCACAGAACCGCGCCAATGTCCTTCAGCTCAAGCTGATTGGACAGAGTCACCCAACTGGTCTCACAGCCAATCTTCTGAAGCTCTTTGAGCCCAGGCCTCCGTTAGAGTACAAACCACCAccggaaaaaagaaaatgtcctCCATTAACAGGAATGGCACAATTTGTGAGTAAGTTTGCTGAGCCTGGAGACCCAGAATATGCTCCGCCTGTTCAAGAAGCTGAAACTCCTGCTCAAAGAAGAGCTAGAATACATAAGTTAAGACTGGAGAAAGGAGCAGAGAAGGCTGCAGAGGAGCTTGAAAAATATGATCCACGTAATGATCCAAATATATCAGGTGATCCATTCCGAACGCTGTTTGTTGCCAGACTTAGTTATGAGACAACTGAGAACAGAATCAAAAGGGAGTTTGAATCTTATGGTCCAATCAAAAGGGTAGGTACTTTTGAATATCCCCATGGGGGTTCGCTGTGTGATTTAAAGGTTCGATTGGTTACCGACAAGGAGACAAATAAGTCTAAGGGTTATGCTTTCATTGAGTATGTGCATCAACGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGAAAGATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGACCTCGACGACTAGGTGGAGGCTTAGGTACTACTAGAGTGGGGGGTGAAGAAGTTAATCAGCGTTATTCTGGCAGggAGCAAGTGCAGTCAGGACCTTCTCGTTCTGAAGAGCCAAGAGTGCGGGAGGATCGCCATGGTGACCGGGATAGAGAAAAATCCCGTGAAAGAGGTAGAGACAGAGATAGAGAAAGGGAGCATTCTCGTGAACTCTCTCACGAAAGAGGTAGGGACAGGGATCGCGATCATCGAGAGGATAGACACCATAGAGACAGAGATAAGAATAGGGACAAAGACAGggatagagaaagagaaagagaccGTGGACGTGATCGAGATAGAGCACGTGGTCGTGATCGTGACCGCGGTCGGGATCGAGATAGGGACCGTGATCGAGATCATGATCGTCATCGTGAGAGGGATAGGGATTACGAAGTTGGGGATTCTGATAGGGGACGCTCACATGATGGAGAGTATGATTATGATCGTGCTGAATCTAAACATGAGAGGGACAGACACGGTGAAAAGGGGCGAGACTATGAACCTGAGGATGATCGTGGGTGGTATAATCAATCTGAGCATGGACGCCGTCATGCAGACCGTGATCACGATCCTGAGCAGTATGATCACTATGAGCATCATCGAGGAAGGAGCCAGTACGATCATGGAGATGATCATGACCATTACAATCAATATCCTGACAATGATAGGATGGAAGATGACTCCCATCATGTCAACTTGGCTTGCGTGGAGCAATCCAAGCGCAAAGAAAGAGCTCACTTGTTCTTGCTATCCATGTA 1514 0.4597 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVQEAETPAQRRARIHKLRLEKGAEKAAEELEKYDPRNDPNISGDPFRTLFVARLSYETTENRIKREFESYGPIKRVRLVTDKETNKSKGYAFIEYVHQRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQVQSGPSRSEEPRVREDRHGDRDREKSRERGRDRDREREHSRELSHERGRDRDRDHREDRHHRDRDKNRDKDRDRERERDRGRDRDRARGRDRDRGRDRDRDRDRDHDRHRERDRDYEVGDSDRGRSHDGEYDYDRAESKHERDRHGEKGRDYEPEDDRGWYNQSEHGRRHADRDHDPEQYDHYEHHRGRSQYDHGDDHDHYNQYPDNDRMEDDSHVERAASESMERERNRDTREYDH 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01616 487 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Bva11g01616 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Bva11g01616 487 PANTHER - 1 365 - -
Bva11g01616 487 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Bva11g01616 487 Gene3D - 125 250 IPR012677 -
Bva11g01616 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Bva11g01616 487 SMART rrm1_1 139 212 IPR000504 GO:0003723
Bva11g01616 487 MobiDBLite consensus disorder prediction 258 487 - -
Bva11g01616 487 MobiDBLite consensus disorder prediction 220 487 - -
Bva11g01616 487 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Bva11g01616 487 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01616 Bva-Chr11 14910102 14915422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01616 110 186 C2H2 Transcription Factor Family AT2G19380 33.766 2.48e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01616 K11093 - csv:101218309 568.926