Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01602 ATGGAACTAAGAGGCCAAGATAAGGAATTTAAGATGCCAACAGCTTTGGGTTATAATCCCAATCCCCCCAAAAGGGATTCCTCTTCAACTCTTGCTTCCACCATAGGGGAAAGAAGTGATCATGAACCTCCTCAAACTCACACAATCTTGCAATCTACAGAGCATCATAATCTTTATCAacctcttcctcctcctcctcctccactGCAGAGACCAAGAAAAGATCCAGATCCAAGCTCTTCTCCTATTGCCACATCAAGTGTAACCAACACCCCGCTTGCAACAAGAGCAGCACCCCCACCACAGCCGCCGCCGCCACCCACACAAACAGGAGCAGCATCAACAACCTCGACATCGTTGATTAGGTACGGAGAATGTCTGAAGAATCACGCAGCAAGCATCGGAGGTCATGTAGTGGATGGCTGCGGCGAGTTCATGCCAAGCGGACAAGAGGGCACCCCAGAATCCTTAAGATGTGCTGCTTGTGAGTGCCACCGGAATTTTCACCGGAAAGAGACTGAAGGTGAACCTCATCATGTTTCCAATTATTACAGTTGTTATCCCAACAAAAGCAATGGTCAAAACAGGATCCCTTCTCCTCATCTTCATTCTCAGCATCCTCAGTTTTCTACTGCCCCCTCTTCTCTGCATCAACAACACCATAGGTTCTCATATGGGTTCGTCGCCACCCCTTCAGCCGCCCTTATTCCGCCAATGATGATGGCCTTTGGCGGTGGGGGAGGACCGGCAGAGTCTTCGAGCGAAGATCTCAACATGTTTCATTCTAATCCCGGAGGCCAATCATCAGTGCAGCCACCACTATCAAAGAAGAGGTTTCGGACCAAGTTTTCACAGCAACAGAAGGATGAGATGATGGAATTTGCTGACAAGATAGGGTGGAAGATCCAGAAACATGATGAGCAGGAGATGCAGCAATTTTGCTCTCAAGTGGGTGTTAAAAGGCAGGCCTTCAAGGTTTGGATGCACAATAACAAACAAGCCATGAAGAAGAATCAAATGTA 1022 0.4648 MELRGQDKEFKMPTALGYNPNPPKRDSSSTLASTIGERSDHEPPQTHTILQSTEHHNLYQPLPPPPPPLQRPRKDPDPSSSPIATSSVTNTPLATRAAPPPQPPPPPTQTGAASTTSTSLIRYGECLKNHAASIGGHVVDGCGEFMPSGQEGTPESLRCAACECHRNFHRKETEGEPHHVSNYYSCYPNKSNGQNRIPSPHLHSQHPQFSTAPSSLHQQHHRFSYGFVATPSAALIPPMMMAFGGGGGPAESSSEDLNMFHSNPGGQSSVQPPLSKKRFRTKFSQQQKDEMMEFADKIGWKIQKHDEQEMQQFCSQVGVKRQAFKVWMHNNKQAMKKNQM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01602 340 MobiDBLite consensus disorder prediction 1 116 - -
Bva11g01602 340 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 276 333 IPR006455 -
Bva11g01602 340 Gene3D - 262 337 - -
Bva11g01602 340 MobiDBLite consensus disorder prediction 79 95 - -
Bva11g01602 340 MobiDBLite consensus disorder prediction 96 110 - -
Bva11g01602 340 MobiDBLite consensus disorder prediction 59 75 - -
Bva11g01602 340 MobiDBLite consensus disorder prediction 21 36 - -
Bva11g01602 340 Pfam ZF-HD protein dimerisation region 121 173 IPR006456 -
Bva11g01602 340 SUPERFAMILY Homeodomain-like 263 337 IPR009057 -
Bva11g01602 340 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 123 172 IPR006456 -
Bva11g01602 340 MobiDBLite consensus disorder prediction 192 216 - -
Bva11g01602 340 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 122 172 IPR006456 -
Bva11g01602 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 338 - -
Bva11g01602 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 57 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01602 Bva-Chr11 14841922 14844360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01602 35 340 ZF-HD Transcription Factor Family AT2G18350 41.987 1.08e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva11g01602 ZF-HD_dimer 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01602 - - tcc:18610918 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00743 08 3857024 3860074 Bva11g01602 11 14841922 14844360 BWGD