Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01557 ATGCTTTACCAAACTCACCAtcctcttctctttcaatttcatcCCTTCGCTTCTTCCACCCTTGAATTCGCAACCACATCATCTTTGTCCTCCGTTCCTCTCTTCTCTCGTCTTCCTCTGCTTAAGGCTGAAACAGAAATGGAGTGCGTGGAAGCAACAGCGTTGAAGACCAGTTTTAGAAAAGATATGGCCTTGAAATTAAGTCCACAAGTCATTATGGAGGAGTTGTCGGCGTTTAGTGTGCAAAATGGTGCTCCTTCCGATGAATTCTTTGTCGACGACCTCCTTGACTTTTCGCACGAAGAAGCCCTTAGCCAAGAGCAACAACCAGAGGAAGAGGAATACAAGGGTGCCCCTGTCTCTGTTTCCATTTCCCCTCAACAAGGGAACCAAAGCCATGAAATTTCCTACCTTGGCACTGTCAATGATGATTTTGGGTGTGTGCCTACCGGCGAACTCAGCGTTCCGgCGGATGATTTGGCAGACTTGGAATGGTTATCTCATTTCGTTGAGGATTCCTTCTCGGAATACTCTGCTGCGTACCCCACTGTAATTTTAACGGAGAAACCCGAGAGCCATGAGGAGAAAGAGCCCGAACAGGGAACCCCTGTTTCGACAAAACCGTGTTTCAAAACTCCGGTTCCGGCCAAGGCCAGAAGCAAGCGAACAAGGACCGGGGTTCGGGTCTGGCCACTTGGGTCTCCTGTGTTCACTGAATCATCCtccacctcctcctcctcaTCGTCTTCTTCGTCTCCCCAGAGCTCTTGGTTAATTTACACCAACACCAACCAGAGTCTCGAGCAGGTTTCTTCGGAAGCCAAGCCCCTAGCgaagaaaccaaagaaaaagccGGCGTCGGACGGGATGGGGAGCACTGGGGGTCAAGCTCCACGGAGATGCAGCCATTGTGGTGTCCAGAAGACCCCACAGTGGCGAACCGGTCCACTTGGAGCCAAAACGCTCTGTAACGCATGTGGCGTCCGATACAAGTCGGGTCGGCTCTTACCCGAATATAGACCAGCATGTAGCCCGACATTCTCGAACGAATTGCACTCAAATCACCACCGGAAAGTGCTGGAGATGCGGCGGAAGAAGGAAATGATTGGTGGAATTGAGTCCGGTTTGGCCCCTCCTCCGGTGGTCCCCAGTTTTTg 1157 0.4875 MLYQTHHPLLFQFHPFASSTLEFATTSSLSSVPLFSRLPLLKAETEMECVEATALKTSFRKDMALKLSPQVIMEELSAFSVQNGAPSDEFFVDDLLDFSHEEALSQEQQPEEEEYKGAPVSVSISPQQGNQSHEISYLGTVNDDFGCVPTGELSVPADDLADLEWLSHFVEDSFSEYSAAYPTVILTEKPESHEEKEPEQGTPVSTKPCFKTPVPAKARSKRTRTGVRVWPLGSPVFTESSSTSSSSSSSSSPQSSWLIYTNTNQSLEQVSSEAKPLAKKPKKKPASDGMGSTGGQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSNELHSNHHRKVLEMRRKKEMIGGIESGLAPPPVVPSF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01557 385 CDD ZnF_GATA 300 349 IPR000679 GO:0006355|GO:0043565
Bva11g01557 385 Pfam GATA zinc finger 301 335 IPR000679 GO:0006355|GO:0043565
Bva11g01557 385 SMART GATA_3 295 349 IPR000679 GO:0006355|GO:0043565
Bva11g01557 385 MobiDBLite consensus disorder prediction 268 303 - -
Bva11g01557 385 ProSitePatterns GATA-type zinc finger domain. 301 326 IPR000679 GO:0006355|GO:0043565
Bva11g01557 385 Gene3D - 293 368 IPR013088 GO:0006355|GO:0008270
Bva11g01557 385 PANTHER GATA TRANSCRIPTION FACTOR 47 368 - -
Bva11g01557 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 296 358 - -
Bva11g01557 385 PANTHER GATA TRANSCRIPTION FACTOR 47 368 - -
Bva11g01557 385 MobiDBLite consensus disorder prediction 235 255 - -
Bva11g01557 385 ProSiteProfiles GATA-type zinc finger domain profile. 295 331 IPR000679 GO:0006355|GO:0043565
Bva11g01557 385 MobiDBLite consensus disorder prediction 190 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01557 Bva-Chr11 14630130 14631652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01557 50 385 C2C2-Gata Transcription Factor Family AT5G66320 53.216 1.89e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva11g01557 GATA 5.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01557 - - aprc:113869559 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00815 08 4183117 4184992 Bva11g01557 11 14630130 14631652 BWGD