Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01539 ATGTCTTCCCCCGGAGAAGGTGAACAACCAACCGCGGAGGAGGCGAAAGCGTCGCAGGGGGCTAAGCCGGTGAAGGAGAAGAAGCCGAAGGCTCCTAAACAGAAGAAGCCCAAAACTGCTGCTCATCCTCCATACTTTCAGATGATCAAAGAGGCCTTATTGGCCCTCAAGGACAAGGGTGGTTCCAGTCCATATGCCATAGCTAAGTACATGGAGGAGAAGCATAAGTCGGTTCTCCCTGCTAATTTCAGGAAAATTTTGGCTCTGCAGCTAAAGAACCAAGCTGCGAGAGGAAAACTCGTGAAGATTAAGGCTTCGTACAAGCTAGCTGAAATTGCtaagaaggagaaagagaagaaaaaggaaaccaaGATGGTGACAAGGTCCACGACAGAGAAGAAGGAGCCCCCTAAACGGAAAGCTGCAACCACCACCACTGCTGCTGCTCCAAAGGTAAAGTCTACTAAGAAAACAGAGACAACTGCAGAACCTGCAAAGAGAGGTGGAGCGAAGAAGACGACACCCACAAAGCCCAATGTGCCAAAGTCTCTGAGGTCTCCTTCCAGAAGGGCCAGAAAAGTTACTGCTGCTGCATG 596 0.4782 MSSPGEGEQPTAEEAKASQGAKPVKEKKPKAPKQKKPKTAAHPPYFQMIKEALLALKDKGGSSPYAIAKYMEEKHKSVLPANFRKILALQLKNQAARGKLVKIKASYKLAEIAKKEKEKKKETKMVTRSTTEKKEPPKRKAATTTTAAAPKVKSTKKTETTAEPAKRGGAKKTTPTKPNVPKSLRSPSRRARKVTAAA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01539 198 PANTHER HISTONE H1 8 196 - -
Bva11g01539 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 41 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva11g01539 198 Gene3D - 36 125 IPR036388 -
Bva11g01539 198 PRINTS Histone H5 signature 133 147 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva11g01539 198 PRINTS Histone H5 signature 170 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva11g01539 198 PRINTS Histone H5 signature 28 49 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva11g01539 198 PRINTS Histone H5 signature 55 72 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva11g01539 198 Pfam linker histone H1 and H5 family 42 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva11g01539 198 SMART h15plus2 39 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva11g01539 198 CDD H15 39 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva11g01539 198 SUPERFAMILY "Winged helix" DNA-binding domain 38 122 IPR036390 -
Bva11g01539 198 MobiDBLite consensus disorder prediction 1 44 - -
Bva11g01539 198 MobiDBLite consensus disorder prediction 116 198 - -
Bva11g01539 198 PANTHER HISTONE H1 8 196 - -
Bva11g01539 198 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01539 Bva-Chr11 14537271 14538134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01539 43 109 Single Myb Histone (SMH) Gene Family AT1G72740 43.284 1.22e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01539 K11275 - gmx:100500169 165.236