Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01537 ATGAAGCGACCAAGGAAATCAAACAGGGTTTCATGGGCTCCTGGAGTTAATCTGTGTCAGGTAAAGATGTTCTTATCTGATGATTGCCCTTCAAAATCTAAGGATGAACTATCCCGCGTCCCTCGGATTAAATGGAAATGCCCACCCCAGTTTGTTTTCAGTTATAACTGGCATGTTGCAGCTGGTGAAGAGAgtagagagaaagaggatCAAAAGATGAGGGAAATGAGGGTACTTGAAGCAGTTTATCCTCGCCTTTCTGCCATTCCTCCTAGCCCTTCTGTTTCCTTGAATGTGGAAGAGGAAGATTACGACGATAGCCTGACTCCTCTCGTCCCTTTGATTcccattgaagaagaagagtcCATGGATATAAACCCTGAAGTTGCAGCAGCAGTGGACATCCCCATAGCTACGCAGTCACAAAACTTGCACCAAAATGCATCAGCAACTTCAACACCCATAAGTTCACAATGTAATAACCCTGCTACCGTCACCCCAACTGCTTATGAGAAACCCTTACCCGGGGTATCATCCGGTTTGAATGTAGATTTAGCTGCGGCTTATGCTCTAGCAGCTGCTATCATGAAGAGCAATGAGCAAGGAAGCGAGATTGATATGGATCTACTGGTTAAGATATTTAATGACCCAATACTGATTGAGAAATTGATTGCCGGTCATAGAATTGATAGGACCACTGAAAATGCTTCCTCAGATACCGTTGGTGTACCTACATCTGCATTCAAGCCTGCAATTCCATCCGCTCCAATGTCTTCACTTACACCTGATAAGCCAGCTTCTGGGATTTCACCCACTGGTGCACTAGGTTTATCTGCTTCTGGGCTGATGCCGGCAGCTGCTTCAAACTCATTGCTGATGCCTACATCTAATAAGCCAGCAACTCCAtcagtttcattttcaaagtcTATGCCCGAGAAATCAGTAAATATAGTTCCATTCTCAAGGCCTATGCCTGATAAACCAGCAACTACAGTTTCGTTCTCAAAGCCTATGCCTGAAAAGCCATCTACTCCCTCATTTCCATTGCCTGCAACTACACTTGATATGCACCGGCCGGTAAACAAAACCATTCCCCATTTGTCAAATGGTGTCCTGTCCGCTTCAAATACCCTGATCCCTCAACAAGATGCCGTTTTGGCATCAGGGGTGAAACGAGCGGAATCATTGGCTTCCATTTCATCCAACAGTGAAACAAACATGGTGTCCATGCCTTCGGCTGGTGGGAACTTGCATGCAGTGGCAAATCAGGTACAACCCACTGTAAGTACAATGCCCTACCAACCAAGTACAACCTCAAGTTTTGCCCCGAAGGAAGCTTATCCTGTGAAGGACGCCAACTATTATAAGAACCTGATTAGGCAACATGGTGCAGATAAGCAAGATATGCTCGACTCACAAATAGGTATCCGTCATAATAACTTCAAAGATTTGAAAACGGTACATAACCATAAACCAGGGGAAGTGAAATTCAAAACTCAGAAACCATGCATATACTTTAACAGTTCAAGGGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCATGACGTTTCTGTTCAGTGGGGAGCTGGTAGCGTCTTAGGGTCCCAGAATACAAAAAGATTGAAACTAGGACCAGAAATTAATGGGAGAACGTA 1658 0.4337 MKRPRKSNRVSWAPGVNLCQVKMFLSDDCPSKSKDELSRVPRIKWKCPPQFVFSYNWHVAAGEESREKEDQKMREMRVLEAVYPRLSAIPPSPSVSLNVEEEDYDDSLTPLVPLIPIEEEESMDINPEVAAAVDIPIATQSQNLHQNASATSTPISSQCNNPATVTPTAYEKPLPGVSSGLNVDLAAAYALAAAIMKSNEQGSEIDMDLLVKIFNDPILIEKLIAGHRIDRTTENASSDTVGVPTSAFKPAIPSAPMSSLTPDKPASGISPTGALGLSASGLMPAAASNSLLMPTSNKPATPSVSFSKSMPEKSVNIVPFSRPMPDKPATTVSFSKPMPEKPSTPSFPLPATTLDMHRPVNKTIPHLSNGVLSASNTLIPQQDAVLASGVKRAESLASISSNSETNMVSMPSAGGNLHAVANQVQPTVSTMPYQPSTTSSFAPKEAYPVKDANYYKNLIRQHGADKQDMLDSQIGIRHNNFKDLKTVHNHKPGEVKFKTQKPCIYFNSSRGCRNGSNCPYQHDVSVQWGAGSVLGSQNTKRLKLGPEINGRT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01537 552 ProSiteProfiles Zinc finger C3H1-type profile. 497 525 IPR000571 GO:0046872
Bva11g01537 552 MobiDBLite consensus disorder prediction 317 348 - -
Bva11g01537 552 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 544 - -
Bva11g01537 552 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01537 Bva-Chr11 14528264 14533288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01537 42 113 Homeobox Transcription Factor Family AT4G02560 41.667 3.36e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva11g01537 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01537 - - gmx:102661587 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00836 08 4306304 4311570 Bva11g01537 11 14528264 14533288 BWGD