Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01516 ATGGCGGAGGAGGACAGATTTACCGGTAAGGTTCTCTGGTTTCACGATTCTAAGGGTTTTGGCTTCATCAAACCCGACGATGGAGGAGAGGATCTCTTTGTTCATCGGTCGTCCATAAAATCCGATGGCTATCGCACCCTCGTAGTAGGTGATCGCGTCGAATTCTTGGTTGCTTTCAGTGAAGACGGAAAATCCAAAGCCGTTGATGTCACTGGCCCCAATGGAGCTCCTCTCCAGTCTAAGAAAGATACTTACGGTGGCGGAGTTGGCCGTGGTGGTGGATACGGCTTTGGTGGTGGATGGAAAGGCGGGGATAGGCGCAATGGCGGCGGCGGAGATTTTGGGCACATAGCCCGGGATTGCAATGTTGGAGGCGGCGCGGGTGGTTGTTACAATTGTGGGCAGTTTGGGCACCTGGCGAGGGACTGCTCTCGCACAAACAACGGCGGCGTTGGCAATGGTGCTTGCTATACCTGTGGTGAAGTTGGGCACATGGCACGAGACTGCACCAACGGAACCGGTGGTGGCGGTGGCAGTAGTGGACGTTGCTTTAAATGTGGGGAAATCGGCCACATGGCGAGGGATTGCAGCAAGGAAAGCGGTGGAAGGTACGGCGGTAGCGGTGGCGGAGGTGTATACAGACAAAGCACTTGCTTTAATTGTGGGAAAGCTGGGCATTTTGCGAAAGAGTGCAACGAGCCTTATGGTTG 710 0.5451 MAEEDRFTGKVLWFHDSKGFGFIKPDDGGEDLFVHRSSIKSDGYRTLVVGDRVEFLVAFSEDGKSKAVDVTGPNGAPLQSKKDTYGGGVGRGGGYGFGGGWKGGDRRNGGGGDFGHIARDCNVGGGAGGCYNCGQFGHLARDCSRTNNGGVGNGACYTCGEVGHMARDCTNGTGGGGGSSGRCFKCGEIGHMARDCSKESGGRYGGSGGGGVYRQSTCFNCGKAGHFAKECNEPYG 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01516 236 SUPERFAMILY Retrovirus zinc finger-like domains 148 199 IPR036875 GO:0003676|GO:0008270
Bva11g01516 236 CDD CSP_CDS 8 72 IPR002059 GO:0003676
Bva11g01516 236 SMART c2hcfinal6 217 233 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 SMART c2hcfinal6 182 198 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 SMART c2hcfinal6 112 123 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 SMART csp_8 8 73 IPR011129 GO:0003676
Bva11g01516 236 ProSiteProfiles Zinc finger CCHC-type profile. 218 233 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Bva11g01516 236 PANTHER COLD SHOCK DOMAIN PROTEIN 2 123 233 - -
Bva11g01516 236 SUPERFAMILY Nucleic acid-binding proteins 6 72 IPR012340 -
Bva11g01516 236 Pfam Zinc knuckle 182 198 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 Pfam Zinc knuckle 217 232 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 Pfam Zinc knuckle 129 144 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 Pfam Zinc knuckle 155 171 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 Gene3D - 7 85 IPR012340 -
Bva11g01516 236 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Bva11g01516 236 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Bva11g01516 236 SUPERFAMILY Retrovirus zinc finger-like domains 112 146 IPR036875 GO:0003676|GO:0008270
Bva11g01516 236 PANTHER COLD SHOCK PROTEIN 2 123 233 - -
Bva11g01516 236 PANTHER COLD SHOCK PROTEIN 2 1 104 - -
Bva11g01516 236 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 104 - -
Bva11g01516 236 Gene3D - 111 149 - -
Bva11g01516 236 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Bva11g01516 236 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Bva11g01516 236 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Bva11g01516 236 ProSiteProfiles Zinc finger CCHC-type profile. 130 143 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 SUPERFAMILY Retrovirus zinc finger-like domains 200 234 IPR036875 GO:0003676|GO:0008270
Bva11g01516 236 ProSiteProfiles Zinc finger CCHC-type profile. 182 198 IPR001878 GO:0003676|GO:0008270
Bva11g01516 236 Gene3D - 150 176 - -
Bva11g01516 236 Gene3D - 177 204 - -
Bva11g01516 236 Gene3D - 211 235 - -
Bva11g01516 236 ProSiteProfiles Zinc finger CCHC-type profile. 156 171 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01516 Bva-Chr11 14415926 14416944 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bva11g01516 CSD 9.7e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01516 K09250 - gmx:100806783 265.774