Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01460 ATGAGTGATaccaaagaaaatgagagagcTGGGCTGGACATGCCAGTGGCTGTAGATGAAGACCAGAAGTTGGTTGATGCACAGGTTCAACCTGAAGATACTTCTGCTCCTGTCCCGGtggaaaattcaaataaagttgaaaattgCAAGGTAGAGGCCCCTCCTGAAGATAAAAATGTGGAACCGGAGGCCATGTTGGAGGGGGATCCTCATCAAGAAGTTCAAAGTTCTCCTCACGTAGTTCCAGTAGAAGATAATGCTCAAATTTCGGTTAAAGCTGATTGTGAACCCACCTCAGTGAAGACCGAAGTCAATGAATTACCGCAGAGAAGTTCAGGCGTTGAGAATGAGACCGTTGTTAGTGAAAATAATGTTGATTCTACTGTAACTGCATTGGTGTTCAAACCCGAAGCTTGTGAAGCGCCTAACAGTAAAACTTGCAATAATGGAGACTCTACACCGTCAATCCATAATGAACCCACTCCACTTCAAGTTGTCCCTGCTCAAACAAAAGCTGAAGTTGGGAATGGAGTAGAAGTTGAGAATAAGATTAATGAAAAGCAAATTGCTGCAGCTGCAGAAAATGGGAATTCAAACTCAAAgcattccttttttttggATGCTGACCATTCATATGATGGCAATGAGTCAGGAACGGAAGAGGAGCAATCAGCTTTCATGAAGGAGCTTGAAAATTTCTTCAGGGAGAGGAGCATGGAATTCAAACCCCCAAAGTTCTATGGAGAAGGCCTTAATTGCCTTAAGTTGTGGAGAGCTGTAACCAGATTGGGCGGCTATGATAAGGTAACTTCATGCAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCCCCAAAGACGTGCACTACAGTTTCATGGACGTTTCGAGGATTTTATGAGAAGGCACTCCTTGAATATGAAAGGAATAAAACAAAGGGTGGCGAGCTTTCTGTGCCTATTGTTTCTCATTCGGAGCCCATGAATCTTGAAAATCAGGCTTCAGCGTCAGGTAGAGCACCAAGGAGAGATGCTGCTGCAAGGGCCATGCAGGGTTGGCACTCACAACGTCTTCTTGGTAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATTCTCTTTCCATGCAAAAGCGTGAAAAGCAGCTTAAAAACATCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCAACCAAACCACAATTGGATACGGCAGTGGTTGATATTGGACCTCCAGCTGATTGGGTAAAAGTCAATGTCCAGAAAACTAAAGATTGTTTTGAGGTGTATGCTTTAGTACCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAGTCTGATCCAGCTGGGCGCTTGGTCATAAGTGGCGAACCAGAACATCCTGATAACCCATGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTACCTTCAAGAATTGATCCCCACCAGACGTCAGCTGTGGTGACCCTGCATGGACAGTTGTTTGTTCGTGTGCCATTTGAGCAGTCAGAATA 1547 0.4292 MSDTKENERAGLDMPVAVDEDQKLVDAQVQPEDTSAPVPVENSNKVENCKVEAPPEDKNVEPEAMLEGDPHQEVQSSPHVVPVEDNAQISVKADCEPTSVKTEVNELPQRSSGVENETVVSENNVDSTVTALVFKPEACEAPNSKTCNNGDSTPSIHNEPTPLQVVPAQTKAEVGNGVEVENKINEKQIAAAAENGNSNSKHSFFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLEYERNKTKGGELSVPIVSHSEPMNLENQASASGRAPRRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSLSMQKREKQLKNINLLKRKKPSYMDNAVKAARSKPTKPQLDTAVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01460 515 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 19 514 - -
Bva11g01460 515 MobiDBLite consensus disorder prediction 1 20 - -
Bva11g01460 515 Gene3D - 413 515 IPR008978 -
Bva11g01460 515 CDD ARID 222 307 - -
Bva11g01460 515 MobiDBLite consensus disorder prediction 50 68 - -
Bva11g01460 515 MobiDBLite consensus disorder prediction 102 122 - -
Bva11g01460 515 Pfam ARID/BRIGHT DNA binding domain 223 307 IPR001606 GO:0003677
Bva11g01460 515 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 415 515 IPR002068 -
Bva11g01460 515 CDD ACD_sHsps_p23-like 434 510 - -
Bva11g01460 515 SUPERFAMILY HSP20-like chaperones 424 511 IPR008978 -
Bva11g01460 515 SMART bright_3 221 312 IPR001606 GO:0003677
Bva11g01460 515 SMART ARID_2 217 307 - -
Bva11g01460 515 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 19 514 IPR045147 GO:0006357
Bva11g01460 515 MobiDBLite consensus disorder prediction 92 122 - -
Bva11g01460 515 Pfam Hsp20/alpha crystallin family 432 514 IPR002068 -
Bva11g01460 515 Gene3D - 220 317 IPR036431 GO:0003677
Bva11g01460 515 SUPERFAMILY ARID-like 214 324 IPR036431 GO:0003677
Bva11g01460 515 MobiDBLite consensus disorder prediction 1 76 - -
Bva11g01460 515 ProSiteProfiles ARID domain profile. 220 311 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01460 Bva-Chr11 14159010 14163960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01460 203 513 ARID Transcription Factor Family AT1G76510 61.709 1.63e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva11g01460 HSP20 7.4e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01460 - - gmx:100791081 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00986 08 5021300 5029453 Bva11g01460 11 14159010 14163960 BWGD