Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01443 ATGATTAAATTTTGGCTTGTGTTCTTTATGGTTCTGTCCAATGGATTCTATTCAACGGGGGCCGGCATGAATAATTCCACAGTACCTGATTCTGTAAATATAGGAATTCTCTATTCTTTCAATACTACTATTGGTAGAATTTTACAAATTGCATTGGAAGCTGCAATTGACGATGTGAATTCTGATCCATCTATTCTTGgtaaaactcaattgaatatCTTAATGCAAGAGGATTCCAAGTACAGAGGTTTCCTGAGCATTGCTGAAACCTTGCAGCTGATGGCAAAACGTACTGTGGCTATAATAGGTCCGCAATCCACTATTACGGCTCATGTCATATCTCATGTAGCAAATGAGCTCCAAGTTCCGCTGCTGTCATTCTCAGCAACAGACCCGACCCTTTCTCCAGTTCAGTTCCCATTCTTCATCAGAACTGCTCAAAATGATCTCTATATGATGACTGCTATAGCAGAACTCGTTGCGTTTTATGGGTGGAGAGAGGTTATTGCAATCTTTGTCGATGATGACCAGGGGAGAAATGGTATTGCTGCTTTAGGGGATAAGCTTTCTGAAAGACGTTGTAAGATCTCATATAAAGCGCCAATGACTGCTGAACCAACTAAGGAGGAGATTACTGATGTGCTTGTTCAGGTTGCTCTGGCAGAATCTCGGATTATAGTTCTTCACACTAATACTATTTGGGGGCCTAAGATTTTCAGTGTGGCACAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTAGCTTCCTTACTACTCTGCTGGATACTGCGAGTCCCCTCCCTCCAGATGAAATGCAAGACATTCAAGGAGTTGTTACACTACGCATGTACACAGCAGAGACAGAGCTTAAAAGGAGATTTGTTTCTAGGTGGAAAAACTTGACCAGAGGAAACACTAGTGATGGCCCAATGGGACTGACTGCTTATTGTCTCTATGCATATGATACTGTCTGGTTACTTGCTCGCGCAATTGACACATTTTTCAAACAGGGAAATCgaattacattttcaaatgattCAAAGTTATCTGAACTACATGGCGACAACTTACATCTTGATGCTTTGAACATCTTCAATGAAGGGAATATTTTGCGTAGTTGTATTTTAGGGGTTAACATGACTGGTGTGACAGGTCAAGTGAGGTATACATCTGATTGCAACCTTGTTAATCCAGCGTTTGAAATTGTCAATGTGATTGGGTCAGGGGTTCGGAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTTGTTCCTCCAGAATCACTTTATTCAAAACCAACCAATCGTTCTAATCAAAAGCTAAATCCTGTGATTTGGCCTGGAGATACAGTCCAGAAGCCTCGTGGTTGGGTTTTTCCCAACAATGGAAAGCGTTTAAAAATTGGAATACCAAAAAGGGTTAGCTACCGCGAGTTTGTCTCTCAAGCACCAGGCACAGACGTGTTCAAGGGTTTTTGCATTGACGTATTTCTTGCTGCAGTGAACTTGTTGCCATATGGTGTCCCATATAATTTTGTCCCATTTGGGGATGGTCACAGCAACCCTAGTAACAGTGAGCTTGTCCGTCTGATCACAGCGGGAGTCTATGATGCTGCAGTAGGTGACATTACTATTACTACAGAGAGAACAAAGATGGTGGATTTTACTCAACCATTTATTGAGTCTGGTCTAGTAGTGGTAACACCCGTAAAGAAGATGGAATCCAGTGCTTGGGCCTTTCTAAGACCATTTACTCCATTGATGTGGGCTGTCACAGCTATCTTCTTCCTAGTAGTGGGAGCTGTTGTTTGGATTTTGGAACATAGGCTGAATGATGATTTCCGGGGACCTCCCAAAAAACAAGTAGTTACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTTGCCCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTAGTGCTGCTTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACTGCAAGCTTAACCTCAATCCTCACAGTGCAGCAGCTTGCTTCCCCTATTAAAGGCATCGAAAGTCTAGTTAATAGCCATGATCGAATTGGCTACCTGCAGGGTTCTTTTACCagaaattatttgattgagGAACTTGGTATTGATGAATCCAGACTTGTTCCCCTAACGACTCCAGAAGAGACTGCTAAAGCATTGAAGGATGGTTCCCACAAGGGTGGTGTTGCTGCATACATTGATGAGCGTGCATACATAGAACTCTTCCTTGCAAGCCGGTGTGACTTTACTATTGTAGGTCAAGAGTTCACAAGAAACGGTTGGGGATTTGCCTTCCCAAGAGACTCACCATTAGCAATTGACTTGTCGACTGCAATTCTGGAATTGGCCGAGAATGGGGATCTACAAAGGATCCACGACAAATGGCTTTTGAGTCGTGCTTGCCTATCTCAAGGTGCAAAGCTTGAAGTGGACAGACTTAATCTTAAGAGCTTCTGGGGCCTCTATCTAGTTGCTGGGTTTGCTTGTTTTCTTGCCCTCTTCATATATCTTATACAGATAATGAGGCAGTACAAGAAGCACTACTCGGAAGAGCTTGAATCTTCTCCCAGTCCTAGCCAACAAAGTTCTGGATCTTCGCGTGTTCGGACATTCATGTCATTTgttgatgaaaaagaagaagatgttAAGAACCGCTCTAAGAGAAGGCAAATGGAGAGGATCTCATACAGAAGCAACGATGGTGGATCAAGCTCAGCCATGTGCTA 2768 0.4162 MIKFWLVFFMVLSNGFYSTGAGMNNSTVPDSVNIGILYSFNTTIGRILQIALEAAIDDVNSDPSILGKTQLNILMQEDSKYRGFLSIAETLQLMAKRTVAIIGPQSTITAHVISHVANELQVPLLSFSATDPTLSPVQFPFFIRTAQNDLYMMTAIAELVAFYGWREVIAIFVDDDQGRNGIAALGDKLSERRCKISYKAPMTAEPTKEEITDVLVQVALAESRIIVLHTNTIWGPKIFSVAQNLGMMGTGYVWIATSFLTTLLDTASPLPPDEMQDIQGVVTLRMYTAETELKRRFVSRWKNLTRGNTSDGPMGLTAYCLYAYDTVWLLARAIDTFFKQGNRITFSNDSKLSELHGDNLHLDALNIFNEGNILRSCILGVNMTGVTGQVRYTSDCNLVNPAFEIVNVIGSGVRRIGYWSNHSGLSVVPPESLYSKPTNRSNQKLNPVIWPGDTVQKPRGWVFPNNGKRLKIGIPKRVSYREFVSQAPGTDVFKGFCIDVFLAAVNLLPYGVPYNFVPFGDGHSNPSNSELVRLITAGVYDAAVGDITITTERTKMVDFTQPFIESGLVVVTPVKKMESSAWAFLRPFTPLMWAVTAIFFLVVGAVVWILEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLASPIKGIESLVNSHDRIGYLQGSFTRNYLIEELGIDESRLVPLTTPEETAKALKDGSHKGGVAAYIDERAYIELFLASRCDFTIVGQEFTRNGWGFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLLSRACLSQGAKLEVDRLNLKSFWGLYLVAGFACFLALFIYLIQIMRQYKKHYSEELESSPSPSQQSSGSSRVRTFMSFVDEKEEDVKNRSKRRQMERISYRSNDGGSSSAMC 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01443 922 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Bva11g01443 922 Pfam Ligand-gated ion channel 811 843 IPR001320 GO:0015276|GO:0016020
Bva11g01443 922 SUPERFAMILY Periplasmic binding protein-like I 27 462 IPR028082 -
Bva11g01443 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 917 - -
Bva11g01443 922 SUPERFAMILY Periplasmic binding protein-like II 448 812 - -
Bva11g01443 922 Pfam Bacterial extracellular solute-binding proteins, family 3 482 810 IPR001638 -
Bva11g01443 922 SMART GluR_14 471 812 IPR001320 GO:0015276|GO:0016020
Bva11g01443 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Bva11g01443 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Bva11g01443 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Bva11g01443 922 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Bva11g01443 922 Gene3D - 581 707 - -
Bva11g01443 922 MobiDBLite consensus disorder prediction 886 909 - -
Bva11g01443 922 CDD GluR_Plant 468 810 - -
Bva11g01443 922 PANTHER GLUTAMATE RECEPTOR 10 917 - -
Bva11g01443 922 MobiDBLite consensus disorder prediction 865 922 - -
Bva11g01443 922 Gene3D - 50 400 - -
Bva11g01443 922 Gene3D - 467 580 - -
Bva11g01443 922 Gene3D - 148 425 - -
Bva11g01443 922 PIRSF IGluLR_plant 1 921 IPR017103 -
Bva11g01443 922 Gene3D - 708 813 - -
Bva11g01443 922 MobiDBLite consensus disorder prediction 867 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01443 Bva-Chr11 14068659 14073486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01443 5 909 Ion Channels AT3G51480 61.810 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01443 K05387 - gmx:100788917 1391.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00967 08 4910247 4914616 Bva11g01443 11 14068659 14073486 BWGD
Bva11g01443 11 14068659 14073486 Bva11g01443 11 14068659 14073486 ECH
Bva08g00967 08 4910247 4914616 Bva11g01443 11 14068659 14073486 ECH