Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01433 ATGTCATCCAGCTCACACGCACTACTTCAACGAAGGCGCAGCATATCTGCGATATACGCTGATTCTCATCTTCGTGGAAAAACCCAACGTCTGAGGGTCACCATGCCGAAAGCAAAAGCTGATACGAAAGCGACCGATAATAGGTTGAAGCGCAAGGGCGCCGGAGCCGGGAGGAAGCAGACAAAGAAAGCTGCCAAGGATCCAAATAAGCCGAAGAGGCCTCCGAGTgccttctttgttttcatGTCGGAATTCAGAGAGACATACAATAAGGAGCATCCGGAGAACAAATCCGTCTCTGTAGTCGGAAAAGCTGCTGGTAATAGGTGGAAATCGATGTCTGACGCTGAGAAAGCTCCATTCATAGCGAAggcagagaagaagaaacaagagtATGAGAAGACCATGAAGAGAttgGCTGAGGGTAAAAGTCCTAAGGACGAAGAGGAGTCTGACAAGTCTAAGTCTGAGGTGAATGACGAAGAGGGAGATGATGAGAGTGGGGAGGGGGAAGAGGATGACGAGTG 527 0.4592 MSSSSHALLQRRRSISAIYADSHLRGKTQRLRVTMPKAKADTKATDNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSEFRETYNKEHPENKSVSVVGKAAGNRWKSMSDAEKAPFIAKAEKKKQEYEKTMKRLAEGKSPKDEEESDKSKSEVNDEEGDDESGEGEEDDE 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01433 175 Pfam HMG (high mobility group) box 71 138 IPR009071 -
Bva11g01433 175 SMART hmgende2 70 141 IPR009071 -
Bva11g01433 175 MobiDBLite consensus disorder prediction 161 175 - -
Bva11g01433 175 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 71 140 IPR009071 -
Bva11g01433 175 Coils Coil 122 142 - -
Bva11g01433 175 CDD HMGB-UBF_HMG-box 71 137 - -
Bva11g01433 175 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 37 171 IPR031061 -
Bva11g01433 175 SUPERFAMILY HMG-box 58 137 IPR036910 -
Bva11g01433 175 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 37 171 - -
Bva11g01433 175 Gene3D High mobility group box domain 55 157 IPR036910 -
Bva11g01433 175 MobiDBLite consensus disorder prediction 107 175 - -
Bva11g01433 175 MobiDBLite consensus disorder prediction 28 78 - -
Bva11g01433 175 MobiDBLite consensus disorder prediction 34 53 - -
Bva11g01433 175 MobiDBLite consensus disorder prediction 120 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01433 Bva-Chr11 14029019 14031256 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva11g01433 HMG_box 4.7e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01433 K25507 K22507 gmx:100499992 189.504