Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01423 ATGGGTGGAGACAGTGTCGTTGATGCTACCACGGAATCGAAGAGTGGTGATGGAGTGACAATCAACATTCGTTGCTCGAATGGGTCGAAATTCTCGGTTCAGATTACCCTCGAATCAACTGTCGGATCGTTCAAGGAAGTTGTCGCTCGGAACTGTGACATCCCCGCCGATCAACAGCGATTGATTTACAAGGGGCGGATCCTAAAGGACGACCAAACCTTGCAAAGCTACGGTTTGGAGGCAGATCATACAATCCATTTGGTTCGTGGTTTTAACCCAGCCGCAACAGGCAATTCAACTGGTGGAACCACAACAGTTGGTACAAATACTACAACAAACAATGTGAGAAGTGCTGGCTCCAATGAAGGTGGGGGTTTAGAAGGATCTGGTTTTGGAGCTTCATTTTTTCCTGGACTTGGCATTAATGGGCTGGATGGCAGTGGCATGAGTGGCTTGTTTGGAGCTGGGCTTCAAGATCTTGATCAAATGCAGGATCCGCTTATTCCAAACCCCAATCTAGTCAGAGAAATAATGAACTCACCTGCTATtcagaatataataaataatcctGAGATAATGAGGAATTTTCTGATGAACAACCCACAGATGCGTGAGCTAATGGATCGAAATCCTGAGCTAGCTCACATACTCAATGATCCCAGTACTCTCCGCCAGACACTTGAAGCTACAAGAAACCCTGAACTCATGCGTGAAATGATGCGAAACACAGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTTAACATGTTGAGGCGCATGTATGAAAATGTTCAAGAACCATTCTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGAGAACTCTAACCCATTTGCCGCACTTCTGGGGACCCAAGGTGGCCAAGCCAGAGACCAATCGACTAACCCATCTACTACTAGTTCAGAAGCTACCGGTGGTTCTCCCTCCCCCAATACTAACCCACTTCCTAATCCCTGGAGCGCTACTGGAGCAACTGGTGGTGCCCAAAATAACACAAGGTCAACTACGGGTGGGGATGCTAGGCAGCAGGCTCCCGCTGGCTTGGGAGGACTTGGTCTTCCACATCTCGAAGGCATGTTGGGTGCTATGCCAGATACCACTTTATTGACCCAATTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATTCTCTCAAATCCACAGGCCATGAATCAGATTCTTGGTGTCAATCCTGATCAGCGGGGTATGCCTGACTTAAATTCTCATGTCAGAGAAATGATGCAAAACCCAGAGTTCCTTCGCCTGTTTTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTATCCCAACTTGGTCGGCAACAATCAACACAGGAATCAGGTCAAACTGGCGGAGGCACTGGATCAACGAACAACATGGGGCTGGAAATGTTGATGAACATGTTTGGGGGGCTTGGAGCTGGTAGCCTAGCCGTTCCGAACAGATCTGATGAGCCACCGGAACAATTGTATGCCACCCAGCTGTCACAGCTTCAAGAGATGGGTTTCTTTGATACTCAAGAGAATTTAAGAGCTCTTATTGCTACCTCAGGGAATGTTCATGCTGCTGTTGAACGGCTTTTGGGGAACCCTGGTCAGTA 1655 0.4653 MGGDSVVDATTESKSGDGVTINIRCSNGSKFSVQITLESTVGSFKEVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTIHLVRGFNPAATGNSTGGTTTVGTNTTTNNVRSAGSNEGGGLEGSGFGASFFPGLGINGLDGSGMSGLFGAGLQDLDQMQDPLIPNPNLVREIMNSPAIQNIINNPEIMRNFLMNNPQMRELMDRNPELAHILNDPSTLRQTLEATRNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNENSNPFAALLGTQGGQARDQSTNPSTTSSEATGGSPSPNTNPLPNPWSATGATGGAQNNTRSTTGGDARQQAPAGLGGLGLPHLEGMLGAMPDTTLLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGMPDLNSHVREMMQNPEFLRLFSSPETMQQLLSFQQALLSQLGRQQSTQESGQTGGGTGSTNNMGLEMLMNMFGGLGAGSLAVPNRSDEPPEQLYATQLSQLQEMGFFDTQENLRALIATSGNVHAAVERLLGNPGQ 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01423 551 MobiDBLite consensus disorder prediction 456 478 - -
Bva11g01423 551 PANTHER UBIQUILIN 4 551 - -
Bva11g01423 551 MobiDBLite consensus disorder prediction 96 124 - -
Bva11g01423 551 SMART CBM 364 406 IPR006636 -
Bva11g01423 551 SMART CBM 200 239 IPR006636 -
Bva11g01423 551 SMART CBM 410 445 IPR006636 -
Bva11g01423 551 SMART CBM 150 187 IPR006636 -
Bva11g01423 551 Gene3D - 195 253 - -
Bva11g01423 551 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Bva11g01423 551 CDD UBA_PLICs 509 547 - -
Bva11g01423 551 CDD Ubl_Dsk2p_like 19 91 - -
Bva11g01423 551 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Bva11g01423 551 MobiDBLite consensus disorder prediction 96 120 - -
Bva11g01423 551 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 4 551 - -
Bva11g01423 551 SUPERFAMILY Ubiquitin-like 12 104 IPR029071 -
Bva11g01423 551 SMART uba_6 509 547 IPR015940 -
Bva11g01423 551 Gene3D - 491 551 - -
Bva11g01423 551 Gene3D - 7 102 - -
Bva11g01423 551 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 503 548 IPR015940 -
Bva11g01423 551 SUPERFAMILY UBA-like 505 547 IPR009060 GO:0005515
Bva11g01423 551 MobiDBLite consensus disorder prediction 275 362 - -
Bva11g01423 551 SMART ubq_7 19 90 IPR000626 GO:0005515
Bva11g01423 551 MobiDBLite consensus disorder prediction 275 352 - -
Bva11g01423 551 Pfam UBA/TS-N domain 509 545 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01423 Bva-Chr11 13979126 13983998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01423 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.06e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01423 K04523 - gmx:100776447 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00944 08 4787219 4792001 Bva11g01423 11 13979126 13983998 BWGD