Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01376 ATGGGATCCAGTGGTAGCAAGGCCAACACTTCTTGCGGTTCATCGTCTACATCATCGACTTCGGGCAGTTTTAGGAAGGGTCGATCTAAGGGGCATAGAGGATTCCAGTCCTATTGTCTGGGAACAACTTCTGGATCTCACGACAGTGATAATGACGAGCAGGTCTGTGAACAGAATAAAGTAAATGGCGGTAATGATGCATATACCAATCGAAATGAAACAGTCTCTGATGAGATGAAAACAGAATCTTTTGGAAAGCTTATGTCCAAGAAATCTGATGAAAGGCCTTGTATGACTTCTAACATTGAGCTTGATGAGTGGGATCAAACAAGCATACACAATGCAGCGTCGAGAACCCGTAGCAACTCTGCTCGTGCTTCGTCAACTCGGTCCTTGAACCCTTCAAGCCGATTCCTTTCTCGGTTTAGCCTCATTCCTGGTAATATGAGCTTCAGACTGAGTAGAACAACCAGTTTGGGATCATCAAGGCATTGCCctatttcttcttcaagttTCTCAATATTTAACAATGATGACGAGCTTCATTTGCATCCCGGATCCACTGACAGCTTGGTGAATAGAAATGAAACTCGGCAATGTAGTGACTTGCTTCCTGCATCTTTTGCTAATCGTATGCCTACAGTGTGTTCTGAAGATACTTCCAATAACTTTAGGTCTAATGATCCAGCATCAGGTTCGTCTAGCAACTTGCTGAACAATCCAACAGTTTCTCCTATCCAGGATGTGGTTAGAGATGGAGATGGTTTAAGACAAGGGTTGGATGTGAACTTGTATTCTCCAAGAATTCAGTCTGGAACAGATAATATTGAGACTAGAAATATTGATCGACGAAATGGATCCCGAGAACCTGTTGAACGGAATGTTCTATTTAGCCGAACACTAAGTGTTGGCAGGCTTCGTGATAGAGTTCTTCGTCGATCAACACTGTCTGGCTTCGACCTTTGCCCGCAtcaacaagaaagagaaggaagtgATGCTGGTCAAAATGGCGAAAGACAAGCAAGGGAGGGAGATTCGAGACTGTTCCCATCCGATAATAATGCTGTAAATTCTCCTTCTACGTTAGGATATCCTTCATCCAGTATGTCTAATTCCTTGTTTGGCATCCAAGATGATGAGGTTGAGCATTCACGGTCAAGAGAAGCTAGGTATCAGGATCTACTGGAGCATCGCTCTAATTTCCTTGAACGGAGAAGGAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAACCTGTCTGGTCATGATAGATCGTGCATATTGTCGGGTCAACATAGAAATGGTCGTTGTACATGCCGTATTAATAATCGTGATGGCAATCTAAATGATGATACCAGTGCTAGAGCAAGCATATCAAGAATTGTTATGCTGGCTGAAGCCTTATTCGAGgttCTGGATGAAATTCACCAGCAATCCGTGGTTTTATCTTCCCGCCCTTCTGTGTCTTCTATTGGATCCGTTCCTGCCCCTACTGAAGTTGTAGAGTCCTTGCCTGTCAAATTATACACGAAATTGCATAAACACCAAGAGGATGCTGCACAATGCTATATATGCCTTGTGGAGTACGAGAATGGTGACAGCGTGCGGGTGTTGCCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTTAAAGAGGTTCATCGGGTCTGCCCACTATGCAGAAGAGATATCTGCATGTCAGATTCACTGCCAACGGTGAACTA 1751 0.4329 MGSSGSKANTSCGSSSTSSTSGSFRKGRSKGHRGFQSYCLGTTSGSHDSDNDEQVCEQNKVNGGNDAYTNRNETVSDEMKTESFGKLMSKKSDERPCMTSNIELDEWDQTSIHNAASRTRSNSARASSTRSLNPSSRFLSRFSLIPGNMSFRLSRTTSLGSSRHCPISSSSFSIFNNDDELHLHPGSTDSLVNRNETRQCSDLLPASFANRMPTVCSEDTSNNFRSNDPASGSSSNLLNNPTVSPIQDVVRDGDGLRQGLDVNLYSPRIQSGTDNIETRNIDRRNGSREPVERNVLFSRTLSVGRLRDRVLRRSTLSGFDLCPHQQEREGSDAGQNGERQAREGDSRLFPSDNNAVNSPSTLGYPSSSMSNSLFGIQDDEVEHSRSREARYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRINNRDGNLNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPTEVVESLPVKLYTKLHKHQEDAAQCYICLVEYENGDSVRVLPCHHEFHRTCIDKWLKEVHRVCPLCRRDICMSDSLPTVN 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01376 583 SUPERFAMILY RING/U-box 506 576 - -
Bva11g01376 583 MobiDBLite consensus disorder prediction 56 72 - -
Bva11g01376 583 Pfam Ring finger domain 527 570 IPR001841 -
Bva11g01376 583 MobiDBLite consensus disorder prediction 1 25 - -
Bva11g01376 583 MobiDBLite consensus disorder prediction 325 346 - -
Bva11g01376 583 SMART ring_2 528 569 IPR001841 -
Bva11g01376 583 ProSiteProfiles Zinc finger RING-type profile. 528 570 IPR001841 -
Bva11g01376 583 MobiDBLite consensus disorder prediction 321 366 - -
Bva11g01376 583 MobiDBLite consensus disorder prediction 350 366 - -
Bva11g01376 583 MobiDBLite consensus disorder prediction 217 249 - -
Bva11g01376 583 MobiDBLite consensus disorder prediction 73 96 - -
Bva11g01376 583 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 583 - -
Bva11g01376 583 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 583 - -
Bva11g01376 583 MobiDBLite consensus disorder prediction 1 96 - -
Bva11g01376 583 MobiDBLite consensus disorder prediction 217 246 - -
Bva11g01376 583 CDD RING-H2_PA-TM-RING 527 570 - -
Bva11g01376 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 575 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01376 Bva-Chr11 13751436 13751699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01376 48 577 C3H Transcription Factor Family AT5G45290 48.195 2.96e-126 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01376 - - gmx:100815830 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01376 11 13751436 13751699 Bva11g01376 11 13751436 13751699 ECH