Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01358 ATGGCTATGCCCAGTCAAGATGATGATGCTTATCTCTCCAATGGTCAAATAACTTATATTCTAGTTGTTATGGGTTCAGCTGCTTTTTTGGTCATAATTTACCATCTTGTTGGTATTTGTTTGCGCAACCAAAGAATCGCAAATCAAAACCCGGAACAAGAACAAAGGCACCGGCATTTAGTTAACATATCACCGTCGGAAACGCCAAGCCAGACTTCGGTCGCCTCTTTGATTCCATCTcacaaatacaaaaagaaggaagtgGTAAGTGAAGATGATACATGTGCGGTGTGCTTGGGAGAATTTGAGGAGGGTGATGAGTTGCGGACTTTGCCGGAGTGCATGCACTCTTATCACGTATCATGCATAGATAAGTGGTTCTATTTGCATTCTAGTTGCCCTATTTGTCGTAAGCTTGCCATGCCTTCACCGGGGATTCACTCCAATGTGCCGGACTTTGGTTCCGGTGAAGTTAACAGACATCACAATTCGTA 494 0.419 MAMPSQDDDAYLSNGQITYILVVMGSAAFLVIIYHLVGICLRNQRIANQNPEQEQRHRHLVNISPSETPSQTSVASLIPSHKYKKKEVVSEDDTCAVCLGEFEEGDELRTLPECMHSYHVSCIDKWFYLHSSCPICRKLAMPSPGIHSNVPDFGSGEVNRHHNS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01358 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Bva11g01358 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 149 IPR044675 -
Bva11g01358 164 Pfam Ring finger domain 93 137 IPR001841 -
Bva11g01358 164 SMART ring_2 95 136 IPR001841 -
Bva11g01358 164 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 8 149 - -
Bva11g01358 164 SUPERFAMILY RING/U-box 85 145 - -
Bva11g01358 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01358 Bva-Chr11 13669208 13670927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01358 14 139 C3H Transcription Factor Family AT1G76410 36.220 2.87e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01358 - - gmx:102660266 155.992