Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01350 ATGCTGTCGCAGATCAGTTACTATCATCAACTTGAAGTTGGTAAAGTCTATCTGATTTCCAAGGGAAGTATAAAGCCAGCTCAAAAGAACTTTAATCACCTTCGTAATGATCAAGAACTGACCCTTGATATGACATCATTTATACAGCCGTGCCCTGATGATGACAACTCAATTCCGAAACAACTATTCCATTTCCGTCCCATTAGTGaagttgaaaatttggaaaataataatgttgttGATGTGATTGGTGTGGTGTTTTCTATTAGTCCTATAGCTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAGAAGGGTCCTACGGTTGAAAGATACGTCTTGTCGAAGTGTTGAATTAACTCTATGGGGAAATTTCTGCAATGCAGAAGGACAAAGGCTGCAAAATATGTGTGATTCTGGGGCATATCCTGTTTTGGCTGTGAAAGCTGCCATAGTAAATGATTTCAAGGGGAAGGTTGTTGGGACCATAGCCTCTAGTCAACTATTTATAGACCCTGATTCTCCAGAGGCTTATAGGCTGAAAGAATGGTTTGACAGGGAAGGGAGGGACATACCAACTGTTTCAATTTCCAGAGAAATATCTAATATTGGTAGTACAAACATACGAAAAACTATATCTCAGATTAAAGATGAGAAGTTGGGGACTTCAGAGAAGCCTGATTGGATCACTGTCTGTGCAAGCGTTTCATTCATTAAGGTTGATAATTTCTGCTACACGGCCTGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAGGTGACTAATAATGGAGATGGGAAATGGCGGTGTGATAGGTGTGACCAGACTATTGATAATTGTGACTATAGGTATATACTACAACTCCAGTTACAAGACCATACAGGCTTAACATGGGTTACTACCTTTCAGCAGTGTGGTGAGGAGATCATGGGTGTTCCTGCCAAAGATCTGTATTATTTGAAATACGAAGAGCAAGATGACGAAAAATTTGCAGAAATAATCCGTAGGATTctcttcaataaatatatattcaagctGAAAGTAAAGGAAGAGACATTCAGTGATGAACAACGTGTAAAGTCAACAGTAGTAAAAGCAGACAAGGTAAACTTCTCATCTGAATCCAGATTTCTTTTGGATATGATTGATAAGCTCAAAGCTGACAGAGCAGAAGACGTCAATCATAAATCCATAATCAATAACACTGGAATCGGGAATGTCGGAAGTGGACAAAATTCCCCACCAGTTTATAATCATGGGGGTCAGTATGCTGCTAGTAGAGAATATGCGACAACAGCAAATCAAGGAGTTCAGTATGGAAACCAATATAATGGCTACTTTCCTTCATCTGGGCGTTCTGGTTCATATATGTCTTGTAACAACTGTGGAGGCTCTGGTCATAGCTCTGCAAATTGCCCAAATAATATGGGTGGACCTGGCCGGTCTACCGGCGTACCGTTTGCAAACAGGGTAGCTGCTGGGTCAAGCGGTGGTGCTGCCCCTGGTGAGTGCTTTAAATGCCATCAACCAGGTCATTGGGCAAGAGATTGTCCTGGTTCCAATGCAGCCACTCCGGCTTATGGAAGCACTAGAGGATTGCCAGCAAGGTATGAGGCTGTTCAAAAGCAACAGCTTGGTGGATATTG 1652 0.405 MTSFIQPCPDDDNSIPKQLFHFRPISEVENLENNNVVDVIGVVFSISPIASIMRKNGTETQRRVLRLKDTSCRSVELTLWGNFCNAEGQRLQNMCDSGAYPVLAVKAAIVNDFKGKVVGTIASSQLFIDPDSPEAYRLKEWFDREGRDIPTVSISREISNIGSTNIRKTISQIKDEKLGTSEKPDWITVCASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQTIDNCDYRYILQLQLQDHTGLTWVTTFQQCGEEIMGVPAKDLYYLKYEEQDDEKFAEIIRRILFNKYIFKLKVKEETFSDEQRVKSTVVKADKVNFSSESRFLLDMIDKLKADRAEDVNHKSIINNTGIGNVGSGQNSPPVYNHGGQYAASREYATTANQGVQYGNQYNGYFPSSGRSGSYMSCNNCGGSGHSSANCPNNMGGPGRSTGVPFANRVAAGSSGGAAPGECFKCHQPGHWARDCPGSNAATPAYGSTRGLPARYEAVQKQQLGGY 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01350 507 ProSiteProfiles Zinc finger CCHC-type profile. 418 433 IPR001878 GO:0003676|GO:0008270
Bva11g01350 507 SUPERFAMILY Retrovirus zinc finger-like domains 452 480 IPR036875 GO:0003676|GO:0008270
Bva11g01350 507 SUPERFAMILY Nucleic acid-binding proteins 167 344 IPR012340 -
Bva11g01350 507 SMART c2hcfinal6 417 433 IPR001878 GO:0003676|GO:0008270
Bva11g01350 507 SMART c2hcfinal6 462 478 IPR001878 GO:0003676|GO:0008270
Bva11g01350 507 CDD RPA1_DBD_B 36 143 - -
Bva11g01350 507 SUPERFAMILY Retrovirus zinc finger-like domains 399 438 IPR036875 GO:0003676|GO:0008270
Bva11g01350 507 Pfam Zinc knuckle 417 433 IPR001878 GO:0003676|GO:0008270
Bva11g01350 507 Pfam Zinc knuckle 462 477 IPR001878 GO:0003676|GO:0008270
Bva11g01350 507 Pfam Replication protein A OB domain 25 129 IPR031657 -
Bva11g01350 507 CDD RPA1_DBD_C 170 343 IPR013955 -
Bva11g01350 507 Pfam Replication factor-A C terminal domain 186 337 IPR013955 -
Bva11g01350 507 Gene3D - 153 344 IPR012340 -
Bva11g01350 507 SUPERFAMILY Nucleic acid-binding proteins 20 148 IPR012340 -
Bva11g01350 507 PANTHER REPLICATION FACTOR A 1, RFA1 2 384 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva11g01350 507 Gene3D - 415 485 - -
Bva11g01350 507 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 343 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva11g01350 507 ProSiteProfiles Zinc finger CCHC-type profile. 463 477 IPR001878 GO:0003676|GO:0008270
Bva11g01350 507 PANTHER REPLICATION PROTEIN A SUBUNIT 2 384 - -
Bva11g01350 507 Gene3D - 14 152 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01350 Bva-Chr11 13638332 13640851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01350 3 438 Core DNA Replication Machinery Family AT5G45400 60.449 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01350 K07466 - qsu:112020147 731.48