Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01318 ATGGGTTATGAAAACGATCCgtATCGTGACGAGGATGGAGAGGCATTGATGGACTACGATGACTTTCAATCCGATCGCGAGCAATCTCCCGAACCCCATCGACAAGGATTTCTGGATGATTTGGAGGAAGATGTCGACAACTGGCATGGGCGAGAGCGATCGCGGACTCCAGTCTATGATAATGATCCATCGATGTCAAAATCGAAGCCAAGGAAGAGACTCATTAAGAAAAGTGACACTGGGAAGCAGTCTGTGGCCCCGGAGCTTGTTGATGAGGAGGAGGAAGATAATATTCCGGCAAGTTTTGTGAGGGATGGCTACAGTGAGGAGGAAGctagaaagaggaagaagggaAACGATGGTGGCAGtgggaagaaggagaagagacATAAGGGGGAGAAGAAGCTTGCAAGTAGTAGTAAAGGCAGCTCAAAATTTGGGATTTCGAAGAAAGGTTTTGCTGGGAAGGATCATGATGGCGAAGTCAAGGAGATGTGGAATACAATTGCCGGGGGGGACTCGGAGGATGACCAAGAAGGTGTCAGGACAGTGGATGATGACAACTTTATAGATGACAGTGGAGTAGAGCCTGCTTTATATGGTAGCGACAATGAACAACGATCTCCTCGTGAATATCCCCAGGCAGAGGAGGGTGAAGAGgatgaagaaattaaggaTCTTTTCAAGATGggcaagaaaaggaagaagaacgAGAGAAGTCCTGCAGAAATAGCTTTGCTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACCGCTGAGGAGGATGCTGAACTTAATAGACAGGGGAAGCCCGCcattaataaattgaagaaGTTGCCTCTTCTCACAGAGGTCCTCGCAAAgAAACAGCTTCAAACAGAGTTTTTAGATCATGGAGTGCTAACATTATTGAAGAATTGGCTCGAACCCCTCCCAGATGGAAGCTtgccaaatataaatatccGTACCgcaattttgaatattttaaatgatTTCCCTATAGACCTAGAGCAGTATGATAGAAAAGAACAGCTGAAAAAGAGTGGTCTTGGAAAGGTAATTATGTTTTTGTCAAAATCGGATGAAGAAATTGGTGTAAATAGGAAACTTGCTAAGGAACTGGTTGATAAATGGAGTCGAcctatatttaataaaagtacGAGGTTTGAAGACATGAGAAACGTTGAGGATGATCGGGTTCCTTACAGAAGGCCATTAGTTAAAAAGCCGGCGAATAAAGCTGCGGGAATGGAATCCAGAGATGGTGATCTTGATTTGGAATTCTCACAGCGTAAGTCTGGGCAGTCCTCTTCCAGTCATCACGCATCAAGGCCAGAAGCAACACCGTTGGATTTTGTGGTGCGTCCCCAATCTAAAGTTGATCCAGAAGAAGTTAGAGCCCGTGCAAAACAAGCTGGACAAGATCAACAGCGGATGAAGATGAATAAGAAGTTACAGCAGTTGAGGGCACCAAAAAAGAGGCAGCTTCAGGCCACGAAACTCAGCGTGGAAGGTCGGGTCTTCATCTTCCATCCATCGGGAACAAGAACTCGAGACAACTTTTCGAAGACCTTGGTTCGTGAGATAGCTTTTGCAAAAGAGCAATCCAGTTCTCGTGATTATCCTTGTCTAACCAGTAATAAAGCCAGTAAAGCCATGGCCGGAACAAACACTTGCTTTGTGAGGGTTCCacgttttataattta 1706 0.4162 MGYENDPYRDEDGEALMDYDDFQSDREQSPEPHRQGFLDDLEEDVDNWHGRERSRTPVYDNDPSMSKSKPRKRLIKKSDTGKQSVAPELVDEEEEDNIPASFVRDGYSEEEARKRKKGNDGGSGKKEKRHKGEKKLASSSKGSSKFGISKKGFAGKDHDGEVKEMWNTIAGGDSEDDQEGVRTVDDDNFIDDSGVEPALYGSDNEQRSPREYPQAEEGEEDEEIKDLFKMGKKRKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLAKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILNILNDFPIDLEQYDRKEQLKKSGLGKVIMFLSKSDEEIGVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPYRRPLVKKPANKAAGMESRDGDLDLEFSQRKSGQSSSSHHASRPEATPLDFVVRPQSKVDPEEVRARAKQAGQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRVFIFHPSGTRTRDNFSKTLVREIAFAKEQSSSRDYPCLTSNKASKAMAGTNTCFVRVPRFII 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01318 568 ProSiteProfiles TFIIS N-terminal domain profile. 302 385 IPR017923 -
Bva11g01318 568 MobiDBLite consensus disorder prediction 1 222 - -
Bva11g01318 568 MobiDBLite consensus disorder prediction 106 138 - -
Bva11g01318 568 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 295 385 IPR035441 -
Bva11g01318 568 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 241 388 IPR035441 -
Bva11g01318 568 Coils Coil 248 268 - -
Bva11g01318 568 MobiDBLite consensus disorder prediction 19 58 - -
Bva11g01318 568 MobiDBLite consensus disorder prediction 175 189 - -
Bva11g01318 568 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 IPR044204 GO:0009742|GO:0032784
Bva11g01318 568 MobiDBLite consensus disorder prediction 429 465 - -
Bva11g01318 568 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 - -
Bva11g01318 568 MobiDBLite consensus disorder prediction 429 444 - -
Bva11g01318 568 Pfam TFIIS helical bundle-like domain 328 382 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01318 Bva-Chr11 13485449 13490086 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva11g01318 Med26 8.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01318 K17498 - gmx:100801805 768.844