Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01310 ATGGTGGAAGGAAGGGTTTGTTTATCTAAGGAAGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAGAGGCTTCAGCGAGCAAAAGCTGTTAGTGCCACAGAGACTGTGAATGTTGCTAACATGATGGCCAGAAGTGGAGGAGATGCACTAAGAGCTTCATCATCGTGTGGTGTGAGGCTGCATGGTAATGCAGATGTTTTTTCCAAGCGTAAGGTGGATAAGTTTGACACAAGTGATCTAGAATGGACTGAAAATATTCCAGAGTGTCCTATTTATTCTCCAACAAAAGAGGAATTTGAGGATCCTTTGGTATATTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATAATTTCTCCTGTTAGTGCTACTGTTCCTGCTGGGGTTGTTTTAATGAAGGAGAAAGTTGGATTCAAGTTTACTACTAGGGTACAGCCACTTCGCCTTGCTGAGCGGGACACTGAAGACAAAGTGACGTTTTTCATGAGTGGAAGAAATTATACATTTCgtgattttgaaaaaatggCGAACAAGAGTTTTGCACGTAGATATTGCAGTGCTGGTTGTCTTCCTGCCGCATTCTTAGAAAAAGAGTTCTGGCATGAAATTGGTTGTGGAAAGATGGATACTGTTGAATATGCATGTGACATTGATGGTAGTGCCTTTTCAAATTCTCCTACTGATCAGCTTGGAAACAGCAAATGGAATTTGAAGAAACTTTCACGGCTGCCGAAATCCATTTTGCGTCTCTTGGAAACAAAAATTCCGGGAGTAACAGAACCTATGCTCTACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGTGTTAATTATCATCATTGTGGAGCATCAAAAACTTGGTACGGCATACCAGGGCATGCAGCTTTGGATTTTGAAAGGGTGGTTAGAGAACATGTATATACTCATGATATTTTGTCCAGTGAGGGGGAAGATGGTGCCTTTGATGTTCTTCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTACTGGAACATGAAGTTCCTGTCTACAAGACAGTGCAAAAGCCAGGGGAGTTTATTGTTACCTTCCCAAGGGCTTATCATGCCGGATTCAGTCATGgttttAACTGTGGAGAAGCAGTCAACTTTGCCGTTGGCGATTGGTTTCCTTTAGGGGCCATTGCTAGCAGGCGGTACGCACTTCTTAATAGGGTGCCTTTACTGCCTCATGAAGAACTTTTGTGCAAAGAAGCAATGATTCTCTATTCGAGCTTAGAACTGGAAGATGCGGACTTTTCCTCTGCTGACTATGCATctcataattgcattaagattgcttttgttaatttgatgCGCTTTCAGCATTGTGCTCGATGGTTCCTTATGAAATCAAGAGCTTGTACAAGTGTTTCTGCACATTCCCACGGCACTATTCTCTGTAGCCTCTGCAAACGTGATTGTTATGTAGCTTATATTGGTTGCGACTGTCACATGCATCCAATGTGCCTTCGTCATGATATTGAACCTCTTGACTTCAACTGTGGAAACAAACACACTCTTTATTTGAGGGAGGATATTACTGATATGGAAGCTGCAGCCAAGAGGTTTGAGCAGGAAAATGGAATATTGGATGAGATTCTTAAGCAAATCAAGGGTGATGAAAACATGTACACATATCCTTTGTTAAATATGTTTCAGAGAGCTGCAGCAGATGGGTACACTCCTTATTGTGAGATAAAAGGGGGTACTGTTACAGAATTTTATTCATCCCCAGATCAGTCAACAAATAATCAAGAGCATCATGTTCCACAAAGTCAATTCATTTTGAGACATAGCTCAGAAGATCTTAAATCTCAAGTGTCTGAGGTTCCATTTTCTTCTGCTGTGTCGACCCTTTGTTCTCTTTCTGAACCTCTCGAGGTCTCATCGGCTCCCAAAAATGAGGTGCATGCTAACTTTGATTTAGGCATTATTGATTCCGAAATGTCTTGCGGAAGGGTACTCGTCAGTGCATGTGAATCTTCACTATCCCCTGCACAGTGCCATGAAAGCTCAAGTAAACCTCAGGGTAGTCTCCATAGATTAGAGAAGCCTGTTGTGGATAACCAGAGTGATGATTCTGACTCAGAGATATTTAGGGCAAAGCGGCCTTCTTCTCTGAAGGcccagaaaagaaatatgaatgaCTCTGTGTCTCTAAAGCATTCTGATCAGGAACTCAAACGATTGAAGAAAGTCATTCATGAAGGAAGAAGTGTGCAACAAATGGGTAGCAACAGAAGTAATGAAAGAAGCTACAAATTTAGTCACCCTACTAATCATAAAGTTGACGGGGAAAGTTGTTTGAAGGATAGATTTTCAAAGGGAAATACTATTCCTATTTCTATTAGGTATAAGAAGTTGGGTAGTGAAAGAGTAAGTAGACAACAAGATCACCACAGGAAAGATAAATTGCAGCATATTAGGGAACCACCTCCCATAGAGTTTGGGCCAAAACGCCTTAAAGTCCGAGGCCCTTCATTTATGGGCTG 2549 0.4017 MVEGRVCLSKEARNGLEFLKRKRLQRAKAVSATETVNVANMMARSGGDALRASSSCGVRLHGNADVFSKRKVDKFDTSDLEWTENIPECPIYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPVSATVPAGVVLMKEKVGFKFTTRVQPLRLAERDTEDKVTFFMSGRNYTFRDFEKMANKSFARRYCSAGCLPAAFLEKEFWHEIGCGKMDTVEYACDIDGSAFSNSPTDQLGNSKWNLKKLSRLPKSILRLLETKIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALDFERVVREHVYTHDILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKTVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAVGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMILYSSLELEDADFSSADYASHNCIKIAFVNLMRFQHCARWFLMKSRACTSVSAHSHGTILCSLCKRDCYVAYIGCDCHMHPMCLRHDIEPLDFNCGNKHTLYLREDITDMEAAAKRFEQENGILDEILKQIKGDENMYTYPLLNMFQRAAADGYTPYCEIKGGTVTEFYSSPDQSTNNQEHHVPQSQFILRHSSEDLKSQVSEVPFSSAVSTLCSLSEPLEVSSAPKNEVHANFDLGIIDSEMSCGRVLVSACESSLSPAQCHESSSKPQGSLHRLEKPVVDNQSDDSDSEIFRAKRPSSLKAQKRNMNDSVSLKHSDQELKRLKKVIHEGRSVQQMGSNRSNERSYKFSHPTNHKVDGESCLKDRFSKGNTIPISIRYKKLGSERVSRQQDHHRKDKLQHIREPPPIEFGPKRLKVRGPSFMG 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01310 849 Pfam jmjN domain 90 122 IPR003349 -
Bva11g01310 849 MobiDBLite consensus disorder prediction 704 723 - -
Bva11g01310 849 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Bva11g01310 849 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Bva11g01310 849 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Bva11g01310 849 MobiDBLite consensus disorder prediction 684 742 - -
Bva11g01310 849 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 47 848 - -
Bva11g01310 849 PANTHER LYSINE-SPECIFIC DEMETHYLASE 47 848 - -
Bva11g01310 849 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Bva11g01310 849 MobiDBLite consensus disorder prediction 807 836 - -
Bva11g01310 849 MobiDBLite consensus disorder prediction 758 779 - -
Bva11g01310 849 Gene3D Cupin 89 448 - -
Bva11g01310 849 SMART JmjN_1 88 129 IPR003349 -
Bva11g01310 849 SUPERFAMILY Clavaminate synthase-like 167 423 - -
Bva11g01310 849 MobiDBLite consensus disorder prediction 807 849 - -
Bva11g01310 849 SMART cupin_9 233 406 IPR003347 -
Bva11g01310 849 MobiDBLite consensus disorder prediction 758 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01310 Bva-Chr11 13416586 13423758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01310 85 556 JUMONJI Transcription Factor Family AT2G34880 31.884 1.13e-64 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva11g01310 JmjC 8.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01310 - - gmx:100798611 1355.89