Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01309 ATGTATGGGGATTGCCAAGTTATGTCAACCATGGGAGGGAACGTAGTGATGAACACAGAAACCCTCCTTTCTCCCACGATCCAAACCCCTAATCACTTCAAATTCATGCCAAACATGGCTTTCCAGTCCTTCCCTTCCTTGaaagaagaagatgggATACTGAGAGGGAAGGAGGAGATGGAGAGTGGTGGGTCTGGCAGTGCCAGTGAGCAAGCTGAAGAGAAATCTGGGAATGAGCAAGAGACCGAACTGCAACCTAAGAAGAAACGTTTTCACAGGCACACAGCTCGCCAGATCCAAGAAATGGAAGCTCTTTTCAAGGAATGTCCACACCCAGAAGATAAGCAGAGGCTGAGACTGAGCCAAGAGTTAGGCTTAAAACCACGCCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGAAAATATGATACTTAGGGCTGAGAATGAGAACCTAAGGACAGAGAGTTATCGTCTACAAGCAGCACTACGCAGTATTATCTGTCCCAATTGTGGTGTTCAAGCCATTATGGGTGCTGAACTTGGCTTGGATGAGCAGCAGCTTCGCCTTGAAAATGCCCACCTACGAGAAGAGTTAGAACGCGTATGTTGTCTCACTTCAAGATACACAGGCCGCTCAATCCAAACAATTGCAGCAGCCCCTCCTCTTATGGCTCCTTCATTGGAATTGGATATGAACATATACTCAAGACACTATGCAGATCCTACGGCTTCTTGTTCAGAAATGATTCCTATGCCAATGTTGCCCCCAGAGCCTTTACCATTTCCAGAGCACGGTCTGCTAATGGAAGGAGAGAAGTCTATGGCAATGGAGCTTGCGAGGTCATCCATGGATGAACTTATCAAGATGTGTCAGGCAACTGACCCACTTTGGATCAGAAATAATGAGAATCAAAGGGAAATGCTTAATCTTGAGGAGTATGCGAGGTTGTTTCCTTTGCCTTCGAACCTCAAAATCCATTCACATGCGCTTAGGACAGAAGCTAGCCGTGGCACTGCTGTGGTAATAATGAATAGCATCACCCTTGTTGATGCGTTCCTTGATGCTCTTAAGTGGATGGAGTTGTTTCCCACAATTGTTTCTAGAGCAAGAACTGTCCAGGTTATATCTTCTGGTGCCTCTGGTCATGCAGGTGGTTCTCTTCAACTGATGTACGCAGAATTGCAAATTATTTCTCCCTTGGTGTCCCCTAGAGAGACTTTCTTCCTTCGTTTTTGCCAACAAAATGCTGAGGAGGGAGCCTGGGTTATCGTTGATTTTCCCATTGACAGCTTTCAGGAAAATTTTCACCCTTCTTATCCCAAATACCGTAGAAGGCCCTCTGGCTGTATCATTCAAGATATGCCAAATGGGTACTCAAGGGTAACCTGGGTTGAGCATGCAGAAGTATATGAGAAACCAGCCCATCAGATATTCAGTAATTATGTATACAGCGGGATGGCATTTGGAGCACAGCGCTGGTTAGGGGTTTTGGGGAGACAATGCGAGAGGGTTGCAAGCCTCATGGCTAGGAACATATCCGACCTCGGAGTAATACCCTCACCAGAAGCACGAAAGAACTTGATGAAGCTGGCCCAAAGAATGATAAGAGTGTTTAGCCAGAACATGAGCACCTCTGGCGGTCAATCATGGACAGCCTTATCAGATTCCCCTGAAGACACTGTTAGAATCACAACGAGGAAGATCACAGAGCCAGGCCAACCTAATGGCGTTATTCTCAGTGCCATCTCCACCACCTGGCTGCACTATTCTCACACCCACATCTTTGATCTCCTCAGAGAAGAACGCCGCAGATCTCAGCTGGATGTTCTTTCCAATGGGAATCCATTGCATGAAGTGGCTCATATTGCCAATGGCTCACATCCTGGCAACTGCATTTCTCTTCTGCGTATAAATGTGGCGAGCAACTCATCCCAGAACGTAGAGCTAATGCTTCAAGAGAGCTGCACTGATCAATCCGGCAGCATAATAGTCTATTCCACAATCGATGTGGACTCTGTTCAGCTAGCTATGAGCGGGGAAGACCCCTCCTGCATTGCTCTTCTTCCTCAGGGGTTCATGATAGTGCCAATggcttcgactagctcgatCTCTGACGCGAGCAGCAAAGCCATGGATGTGAATTCTTCTGAAACTGGGAGGGGACCCGAGGGCACTGTGAATTCAGGTTGCCTTTTAACTGTGGGGCTACAAGTTCTGGCAAGCACAATCCCTTCTGCAAAGATCAACCTTTCAAGCGTGACCGCAATCAATAACCATCTCTGTAACACTCTGCGCCAGATTGAAGCAGCTCTGTGCAACACTAGTAATGGCAGCATAGAACCCACAACCAGTGCACCCCCAAAGCAATA 2399 0.4656 MYGDCQVMSTMGGNVVMNTETLLSPTIQTPNHFKFMPNMAFQSFPSLKEEDGILRGKEEMESGGSGSASEQAEEKSGNEQETELQPKKKRFHRHTARQIQEMEALFKECPHPEDKQRLRLSQELGLKPRQVKFWFQNRRTQMKAQQDRAENMILRAENENLRTESYRLQAALRSIICPNCGVQAIMGAELGLDEQQLRLENAHLREELERVCCLTSRYTGRSIQTIAAAPPLMAPSLELDMNIYSRHYADPTASCSEMIPMPMLPPEPLPFPEHGLLMEGEKSMAMELARSSMDELIKMCQATDPLWIRNNENQREMLNLEEYARLFPLPSNLKIHSHALRTEASRGTAVVIMNSITLVDAFLDALKWMELFPTIVSRARTVQVISSGASGHAGGSLQLMYAELQIISPLVSPRETFFLRFCQQNAEEGAWVIVDFPIDSFQENFHPSYPKYRRRPSGCIIQDMPNGYSRVTWVEHAEVYEKPAHQIFSNYVYSGMAFGAQRWLGVLGRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIRVFSQNMSTSGGQSWTALSDSPEDTVRITTRKITEPGQPNGVILSAISTTWLHYSHTHIFDLLREERRRSQLDVLSNGNPLHEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSIIVYSTIDVDSVQLAMSGEDPSCIALLPQGFMIVPMASTSSISDASSKAMDVNSSETGRGPEGTVNSGCLLTVGLQVLASTIPSAKINLSSVTAINNHLCNTLRQIEAALCNTSNGSIEPTTSAPPKQ 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01309 799 MobiDBLite consensus disorder prediction 58 95 - -
Bva11g01309 799 SMART HOX_1 86 149 IPR001356 GO:0003677
Bva11g01309 799 CDD START_ArGLABRA2_like 282 512 - -
Bva11g01309 799 Coils Coil 139 164 - -
Bva11g01309 799 ProSiteProfiles START domain profile. 278 516 IPR002913 GO:0008289
Bva11g01309 799 Pfam START domain 288 513 IPR002913 GO:0008289
Bva11g01309 799 SUPERFAMILY Homeodomain-like 82 146 IPR009057 -
Bva11g01309 799 SMART START_1 287 513 IPR002913 GO:0008289
Bva11g01309 799 CDD homeodomain 87 146 IPR001356 GO:0003677
Bva11g01309 799 PANTHER - 74 787 - -
Bva11g01309 799 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Bva11g01309 799 SUPERFAMILY Bet v1-like 281 515 - -
Bva11g01309 799 SUPERFAMILY Bet v1-like 539 778 - -
Bva11g01309 799 Pfam Homeodomain 92 143 IPR001356 GO:0003677
Bva11g01309 799 Gene3D - 72 158 - -
Bva11g01309 799 Gene3D - 287 496 IPR023393 -
Bva11g01309 799 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 787 IPR042160 -
Bva11g01309 799 MobiDBLite consensus disorder prediction 74 88 - -
Bva11g01309 799 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01309 Bva-Chr11 13402151 13407425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01309 26 784 Homeobox Transcription Factor Family AT5G46880 56.914 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva11g01309 START 9.7e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01309 - - gmx:100812829 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01309 11 13402151 13407425 Bva11g01309 11 13402151 13407425 ECH
Bva11g01309 11 13402151 13407425 Bva03g01439 03 13682307 13690361 ECH