Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01300 ATGGATGGAATTAGTAACAGCGGCGGAGAAGTTGCCACCCAGACGCCGGCGCCGGCGCCCATGCCTAATTCCAATACACCACCGCCATTTCTTAGTAAGACTTATGACATGGTGGATGATCCCTCCACTGATTCGATTGTGTCGTGGAGCCAAACTAACAATAGCTTCGTGGTTTGGAACCCACCCGAGTTTGCCAGAGACCTGTTGCCCAAGTACTTCAAGCACAACAATTTCTCCAGTTTTGTGAGGCAGTTGAACACCTATGGTTTCAGGAAGGTTGATCCAGACCGCTGGGAATTTGCAAATGAGGGATTTTTGAGGGGTCAGAAACACTTACTTAGGAGTATAACTAGGCGAAAACCTGCCCATGGTCATAGTAATCAACAGGCACAACAAGCACATGGTCAGAGTTCATCGGTGGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGACttaaaagagataagaatGTGCTCATGCAGGAGCTTGTGAGGTTTAGACAGCAGCAACAATCTACTGATAACCAGCTGCAGGCAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCGAAGGCTGTTCAGAGCCCTGGCTTCTTGGCTCAGTTTGTACAGCAAAATGAGAGCAATAGGCGCTTAACTGAAGCCAATAAAAAACGGCGCCTGAAGCAGGAAGGTATTGAAGCAGATAATACTGCTCATCCTGATggacaaattattaaatatcaacCTCTGATGAATGAAGCAGCAAAAGCAATGCTAAGACAGATCATGAAGTTGGATTCTTCTCGGATTGAATCTTTTAGTAATAATCCTGACAGTTACTTGATTGGTGATGGTTCATCATCATCCGCTGCAATGGACAGTGGAAGCTCTTCTAGCCGAACTTCTGGAGTAAGACTTCAAGAGGTCCCACCAACTTTGGGGAAGTCGTCTCACGTTGCAGCCACATCAGGGACTTCAGGGCCTGGCCTCTCAATGGGATCTGAAATACAATCTAATCCACAAGCAGCAGCTGAAAAAGTAACGACAGGCCAATATCAGGATATAAATGCGCTGGTTGGAGTAACAGAGGCGCATTCAATTCCTGTTCCTCGGGAAGATGTCCTCATGTCCGAGCTTTCTTCAATACCAGAGATAGTGCCAGAAAGTATTCTTGATATTGCTGGAGAAAATTATATTGGACCTGACACAGGCAGTGAGCAATTTGTTGATCCTACTTCATTGGAAGTGAATGGATCATTGCCCCTTGATCTTGAAAATATTTCACCTGATCCAGACATTGATGACTTGTTACGCAATTCTTCCTTCTGGGATGATGTTCTTGTGCAAAGTCCACTGCCAGAGGACGTTGATCTCTATGCTACTGAAGTGTCCATGGGGAATGAAGCACAGCCTATGGAAAATGGATGGGACAAAACTCAACATATGGATCAGCTTACGGAGCAGATGGGTCTTCTCTCTTCTGATGCTAAGGGAATTCAAAAATCTTTGTG 1538 0.4499 MDGISNSGGEVATQTPAPAPMPNSNTPPPFLSKTYDMVDDPSTDSIVSWSQTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHSNQQAQQAHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRFRQQQQSTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQNESNRRLTEANKKRRLKQEGIEADNTAHPDGQIIKYQPLMNEAAKAMLRQIMKLDSSRIESFSNNPDSYLIGDGSSSSAAMDSGSSSSRTSGVRLQEVPPTLGKSSHVAATSGTSGPGLSMGSEIQSNPQAAAEKVTTGQYQDINALVGVTEAHSIPVPREDVLMSELSSIPEIVPESILDIAGENYIGPDTGSEQFVDPTSLEVNGSLPLDLENISPDPDIDDLLRNSSFWDDVLVQSPLPEDVDLYATEVSMGNEAQPMENGWDKTQHMDQLTEQMGLLSSDAKGIQKSL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01300 512 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01300 512 MobiDBLite consensus disorder prediction 225 253 - -
Bva11g01300 512 SUPERFAMILY "Winged helix" DNA-binding domain 25 119 IPR036390 -
Bva11g01300 512 MobiDBLite consensus disorder prediction 226 244 - -
Bva11g01300 512 MobiDBLite consensus disorder prediction 1 19 - -
Bva11g01300 512 MobiDBLite consensus disorder prediction 293 315 - -
Bva11g01300 512 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 494 IPR027725 -
Bva11g01300 512 Gene3D - 22 120 IPR036388 -
Bva11g01300 512 MobiDBLite consensus disorder prediction 325 357 - -
Bva11g01300 512 MobiDBLite consensus disorder prediction 293 357 - -
Bva11g01300 512 MobiDBLite consensus disorder prediction 1 32 - -
Bva11g01300 512 Coils Coil 148 175 - -
Bva11g01300 512 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01300 512 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01300 512 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01300 512 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01300 512 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva11g01300 512 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 8 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01300 Bva-Chr11 13370059 13373223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01300 5 502 HSF AT1G32330 53.635 6.04e-174 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva11g01300 HSF_DNA-bind 2.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01300 K09419 - gmx:732544 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01300 11 13370059 13373223 Bva11g01300 11 13370059 13373223 ECH