Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01296 ATGGGTAGGCCACCATGTTGTGATGAGAATGATACTGTGAAGAAAGGGCCATGGACACCAGAAGAAGATCAGAAGTTGATGGATTACATTGGCAAACATGGCCATGGAAACTGGAGAACTCTCCCAAAGCTTGCAGGTCTCAACAGGTGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTATCTGAGGTCTGATATTAAGAGAGGGAAATTCACTGAAGAAGAGGAGAGAATGATCATTAACCTTCATTCAGATCTCGGAAACAAGTGGTCTAAGATTGCAGCCCATCTGCCGGGAAGAACTGATAATGAAATCAAGAATTTCTGGAACACCCACATAAGAAAAAAGCTTCTTCAGATGGGTATTGACCCAGAAACTCACAAGCCAAGAACTGACTACAATCACCTCTTGAATCTTTCACAGTTGCTTGGCATGTCAGCAAGCTTGGGCAATTTAATGAGTCCTTGGCGAAATCCACTTGGTTTACAAGCAGATGTCACCCATTTAGCCAAACTCCAGCAACTACAAAATTTGCTGCAAATTTTGAATAACAATTCAGTTGTTAATATGAATAACCTCTTAGGGAATAAGACCCTTGGCTTCAACCCATTTGAAGCATTTCTCAATAAGTCAAGCACTACCATCCAAGACCCTAGTCTATTCCCTCAAGCACAAAGTAATTTCTCCCAggatatttcaaaatcatcatGGACAGACATAGCAGGTGGATTTAATGCAGAAGCTCTTGGTTTCAACAATAGCAGCATCACTTCTCATGAAACCCAGAAAGAAAACACACTTCCTGCATTAGTTTCATCCTCAACGGGCACTAGTATTTTCAACCAAAAGGACACTTGTAACACAGCTCAAATGTCCTTTCAGTCACCTTCGCCCCCAATATTTGATGCTTGGGAAAAGCTTTTGGATGATGAAGAAAGTGGTTCTATTTGGAAAGAAATTCTCGAGTACGTTCTGTCTAATTCCTCGCTTTTCTA 995 0.408 MGRPPCCDENDTVKKGPWTPEEDQKLMDYIGKHGHGNWRTLPKLAGLNRCGKSCRLRWTNYLRSDIKRGKFTEEEERMIINLHSDLGNKWSKIAAHLPGRTDNEIKNFWNTHIRKKLLQMGIDPETHKPRTDYNHLLNLSQLLGMSASLGNLMSPWRNPLGLQADVTHLAKLQQLQNLLQILNNNSVVNMNNLLGNKTLGFNPFEAFLNKSSTTIQDPSLFPQAQSNFSQDISKSSWTDIAGGFNAEALGFNNSSITSHETQKENTLPALVSSSTGTSIFNQKDTCNTAQMSFQSPSPPIFDAWEKLLDDEESGSIWKEILEYVLSNSSLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01296 331 Gene3D - 70 117 - -
Bva11g01296 331 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Bva11g01296 331 MobiDBLite consensus disorder prediction 1 20 - -
Bva11g01296 331 SMART sant 67 115 IPR001005 -
Bva11g01296 331 SMART sant 14 64 IPR001005 -
Bva11g01296 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Bva11g01296 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva11g01296 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Bva11g01296 331 CDD SANT 70 113 IPR001005 -
Bva11g01296 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva11g01296 331 PANTHER MYB TRANSCRIPTION FACTOR 1 323 - -
Bva11g01296 331 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Bva11g01296 331 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Bva11g01296 331 Gene3D - 12 68 - -
Bva11g01296 331 CDD SANT 17 62 IPR001005 -
Bva11g01296 331 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01296 Bva-Chr11 13348714 13349820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01296 1 322 MYB Transcription Factor Family AT5G16770 48.368 4.81e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva11g01296 Myb_DNA-binding 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01296 K09422 - gmx:778082 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01142 08 5865767 5866852 Bva11g01296 11 13348714 13349820 BWGD
Bva11g01296 11 13348714 13349820 Bva11g01296 11 13348714 13349820 ECH