Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01283 ATGGCGTCTCTGGGCAATCCAAGAACTTGGATTCCATATATGAACAACAAAGATTGTTCTCAAGGCTTTTGTAGCTTGTACTGCCCACAGTGGTGCTATATAGCGTATCCTCCTCCACCACCTTCCTATGAATTTCCTGAGGAAGATTCAGGCCCCAATTTCTCCCCGCTTGTTATTACAATCATTGGGATTTTGGCCagtgcttttcttcttgtaagTTACTATACTGTAATCTCCAAGTACTGTGGTAATAGAGAATCTGCACGCAGAGGTAACCGTGACCCAAATGGAGAATTGGAAGACAATCACAATCCTTCTCTCCATGAGCCCTGGCATGTCCCAACCACTGGATTAGATGATGCTCTGATCAAATCCATCACAGTTTGCAAGTACAAGAAAGGTGATGGGTTGCTTGGAGTAGCAGATTGCTCTGTTTGTCTAAGTGAGTTTCAAGAAGGTGAAAGTGTGAGGCTCTTGCCCAAATGCAGCCATGCTTTTCATCTTCCTTGCATTGACACTTGGCTCAAATCTCACTCCAATTGCCCTCTATGTCGTGCGAGTATTTTCACCTTCAGCCCTTCTGCTCCTCAGGTGGCCATTCCAGTCATAGAACTTTCTTCAAGGAGTGAAGCTTCAACAGAAAACCAACGTGCAAATGAAAGAGTAGCTTCTGGGAGAGATAATGGAAGTAGTTCTGTGGAAGAAGAAGTAATGCACACTGCTGAAGCTCCAAAGCACGCATTGCGTGCTTACAGCGATTTGAGTAGTTTGCAGGGAAGGCATAGTATAATTGAGATCAGAGATGAAGGGTATGATTCAATGAGAAGAGCAATCTCTATGGATCATTCATTTCAAAGTGGTCTTTCAGCTGCTGATGTTTTGCATATGAATCAAGATCAAGATACTTTAGCAGAAGAATGCTCTGCTGAAGCTGGTCCATCCAAGAGATCCCGTGGAGAAAGTAGCAAGTCTAGTTGTAAAAGAAAGGTGTTACATTGTGTACTGAGTCCAATTGCCATGAAAAGATCGTTTTCCAGTGGGAGATTCTCATTCACCAGGAATGCCAGAGGAAGATA 1076 0.4284 MASLGNPRTWIPYMNNKDCSQGFCSLYCPQWCYIAYPPPPPSYEFPEEDSGPNFSPLVITIIGILASAFLLVSYYTVISKYCGNRESARRGNRDPNGELEDNHNPSLHEPWHVPTTGLDDALIKSITVCKYKKGDGLLGVADCSVCLSEFQEGESVRLLPKCSHAFHLPCIDTWLKSHSNCPLCRASIFTFSPSAPQVAIPVIELSSRSEASTENQRANERVASGRDNGSSSVEEEVMHTAEAPKHALRAYSDLSSLQGRHSIIEIRDEGYDSMRRAISMDHSFQSGLSAADVLHMNQDQDTLAEECSAEAGPSKRSRGESSKSSCKRKVLHCVLSPIAMKRSFSSGRFSFTRNARGR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01283 358 MobiDBLite consensus disorder prediction 209 235 - -
Bva11g01283 358 MobiDBLite consensus disorder prediction 86 107 - -
Bva11g01283 358 MobiDBLite consensus disorder prediction 304 323 - -
Bva11g01283 358 Pfam Ring finger domain 142 185 IPR001841 -
Bva11g01283 358 CDD RING-H2_PA-TM-RING 142 185 - -
Bva11g01283 358 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Bva11g01283 358 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 354 - -
Bva11g01283 358 MobiDBLite consensus disorder prediction 86 110 - -
Bva11g01283 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 190 IPR013083 -
Bva11g01283 358 SUPERFAMILY RING/U-box 142 192 - -
Bva11g01283 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 354 IPR044675 -
Bva11g01283 358 SMART ring_2 143 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01283 Bva-Chr11 13305427 13306961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01283 1 324 C3H Transcription Factor Family AT3G03550 40.974 1.17e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01283 - - gmx:100792267 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01152 08 5906160 5907700 Bva11g01283 11 13305427 13306961 BWGD
Bva11g01283 11 13305427 13306961 Bva11g01283 11 13305427 13306961 ECH