Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01261 ATGTCTCCACCGGTATTGGCTGCCGAGGAGGGGCAGAGCAACGTCTCAACGGTTGCATCTTCAGCATCCTCTGACTGTGTCTCTCAGAATGGGACTGGATTGAAAGAACGCAATTACCTAGGATTGTCAGATTGCTCATCAGTGGACAGTTCTAGTTACCCAAGCTTGTCTGATGAGAAGAAAGACAACTTGAATTTGAAGGCTACAGAATTACGGTTGGGTCTTCCTGGATCCCAATCTCCTGAAAGAGAAGCAGATATTCACTTGTCAACTTCAAAAAAGCTTGATGAGAAGCCTCTGTTTCCTTTGCTTCCTACAAAAGATGGAATATGTTCATCCTCACAGAAGGCTGTCGTGTCAGGCAACAAAAGAGGATTTTCTGACGCCATAGATGTGTTTCCTGAGGGTAAATTTCCTGGTAATTCTGGGATAAATGTAATGCTATCTCCTAGGCCTTCTGGAGGTCAGCCGAATGTAATGAAAGAGATGCCAAGCAAGGTGGTACAGGAACGGCCTCCTGCTGCTAATGGAGCTGGTCATAACCATGTAGGTGCTTCTACCACCAGCAGTGCACCAGCTGCGAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAACTCATTGGCCACTACTTCAAAGAACAATGAAGAAGTTGATGGAAAACCAGGTTCTGCTGCTCTCTTCGTGAAAGTTAGTATGGATGGTGCTCCTTATTTAAGGAAGGTAGATCTAAGAAGTTATTCAACATACCAAGAACTGTCTTCTGCACTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGCTCCCATGGAGCTCCtggaagagaaattttaagtGAGAGCAAGCTGAGGGACCTTCTGCATGGATCAGAATATGTACTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGGGATGTCCCATGGGAGATGTTCATTGATACTTGCAAGAGGCTGAAAATCATGAAGGGGTCTGATGCCATTGGCTTGGCTCCAAGGGCCATGGAGAAATCCAAGAGCAGGAGCTA 1052 0.4496 MSPPVLAAEEGQSNVSTVASSASSDCVSQNGTGLKERNYLGLSDCSSVDSSSYPSLSDEKKDNLNLKATELRLGLPGSQSPEREADIHLSTSKKLDEKPLFPLLPTKDGICSSSQKAVVSGNKRGFSDAIDVFPEGKFPGNSGINVMLSPRPSGGQPNVMKEMPSKVVQERPPAANGAGHNHVGASTTSSAPAAKAQVVGWPPIRSYRKNSLATTSKNNEEVDGKPGSAALFVKVSMDGAPYLRKVDLRSYSTYQELSSALEKMFSCFTLGQCGSHGAPGREILSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01261 350 ProSiteProfiles PB1 domain profile. 230 334 IPR000270 GO:0005515
Bva11g01261 350 SUPERFAMILY CAD & PB1 domains 228 331 - -
Bva11g01261 350 MobiDBLite consensus disorder prediction 7 33 - -
Bva11g01261 350 MobiDBLite consensus disorder prediction 172 191 - -
Bva11g01261 350 MobiDBLite consensus disorder prediction 1 33 - -
Bva11g01261 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 343 IPR003311 GO:0005634|GO:0006355
Bva11g01261 350 PANTHER AUXIN-INDUCED PROTEIN 20 343 - -
Bva11g01261 350 Pfam AUX/IAA family 69 341 IPR033389 -
Bva11g01261 350 Gene3D - 226 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01261 Bva-Chr11 13182842 13186578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01261 234 340 B3 DNA Binding Superfamily AT4G23980 30.841 2.33e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva11g01261 AUX_IAA 2.6e-92 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01177 08 6050326 6055364 Bva11g01261 11 13182842 13186578 BWGD