Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01258 ATGGAGCAACTTGCTCAACTGGGTTTTCTGGAAGAATTGCTAGCTCCCAGAAGAGACACTTGGAACACTCCGCCCACTGGGTTGAGTGAGCTCTTACCAAATGGTTGGAGCTTTGACTCTTTTGACGAAAACCCATCACTAGCTACTTTAAATCCTCCATTTGCTGCACTTTCAACACCTATAGACCATAGATTTGAATGCCTTTATGGTAGTGAAGCAGCATACCCTTTTGTTGATGGGTTCTCAGTACCAGAGCTTGATTCGTCTTACACCAGGAATGAAGACTCTGCACCACTTCCAGCACAAGAAGATAACCCATCAATGGAGCATGAAGAGCTTGGCTTTCTGGGCGGTGAAAATCAACAGGGttttgaagaaagaaacaatgtCTGCAAAATTGAGGAACAAGCTACTGAAATTCCAGTCTTTAACACGGGTTTGTGTGGAGACAAAAAACCCAAGTCCAAGAAGCTGGAAGGGCAGCCCTCGAAGAATCTCATGGCAGAAAGGAGGAGAAGGAAGCGCCTGAATGACCGTCTTTCCATGCTGAGGTCAATAGTCCCAAAGATTAGCAAGATGGACAGGACTTCTATTCTTGGAGATACCATAGATTACATGAAAGAGCTTCTTGAAAGGATAGGTAAGttgcaagaagaagaaacagaagaGGGTATAAATCAGATAAACCAATTGGGCATTTCCAAGgaactgaagccaaatgaagTCATGGTCAGAAATTCCCCAAAGTTTGATGTTGATAGGAGCGACCAGAACACGAGGATCAGTATCTGCTGTGCAGCAAAGTCTGGTTTGTTACTGTCAACAGTGAACACACTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTCATAAGTAGCTTCAATGACTTTTCATTGCAAGCATCTTGCTCAGAGGTAGCTGAGCAGAGAACAAGCATCAGCCCTGAAGATTTAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTGTA 1001 0.4156 MEQLAQLGFLEELLAPRRDTWNTPPTGLSELLPNGWSFDSFDENPSLATLNPPFAALSTPIDHRFECLYGSEAAYPFVDGFSVPELDSSYTRNEDSAPLPAQEDNPSMEHEELGFLGGENQQGFEERNNVCKIEEQATEIPVFNTGLCGDKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEETEEGINQINQLGISKELKPNEVMVRNSPKFDVDRSDQNTRISICCAAKSGLLLSTVNTLEALGLEIQQCVISSFNDFSLQASCSEVAEQRTSISPEDLKQALFRNAGYGGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01258 333 PANTHER - 3 333 - -
Bva11g01258 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 333 - -
Bva11g01258 333 SMART finulus 166 215 IPR011598 GO:0046983
Bva11g01258 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Bva11g01258 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Bva11g01258 333 Gene3D - 152 224 IPR036638 GO:0046983
Bva11g01258 333 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01258 Bva-Chr11 13167283 13169132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01258 150 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 70.652 1.10e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva11g01258 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01258 - - gmx:100806571 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01179 08 6070708 6072388 Bva11g01258 11 13167283 13169132 BWGD