Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01247 atgaagaagatgggTGAGATAAGGAAATGGGTTTTCTTCCTGTGGTGGCTTGGAATGACTCTGCAGCTCTGCTTCTTGCTGGGTGGTTGTTCTGAGACGACTTCCGTTAGAAGAGGAGTTAAGAGTAGAAGACtggcttcttcttctctccctGCAATCAAGCTAAATGACGAAGATGATGACCAACAGGTGGTGGTTGACAACGGTATCGTCCGCGTCACTTTGTCAACGCCGGATGGTTATGTGCTTGGAATCTCATTTAATGGGATTGATAATGTACTTGAAGCAGCTAATGAACATGTTGATAGAGGGTATTGGGATGTTGTTTGGAATGAACCAGAAAGTAAGAGTAGCTTTCAGAGAATCACAGGCACCGAATTCTCTGTGATAGCAGCAAATGAGGACCAAGTAGagctttcattttcaagaaATTGGACTACTTCCATGAATGGCTCAAGTGTCCCTATAAACATAGACAAAAGGTACATCTTTCGTAGAGGTGATTCAGGATTTTACGCATATGCAATATTTGAACGCTTAGAAGAGATGCCAGCGGTGGAGGTTGATCAAATTAGAATTGTCTTCAAACTCCaggaaaaaaaGTTCCAATACATGGCTTTATCAGACACTAGGCAAAGAAACATGCCAACTATGGAAGATAGAAGCAGAGGGCAGCCCCTCGCATACCCTGAAGCTGTTCTCTTAACCGATCCAAGTAAAGCAGAATTTAGAGGAGAGGTGGATGACAAGTACCAATACTCGATTGAGAACAAAGACAACTCTGTTCACGGGTGGATTAGCCCTGATTCTGATTCACCCGTGGGCTTCTGGATTATAACACCCAGCAATGAATTCCGCAATGCTGGACCAATCAAACAAGACCTCACATCTCATGTTGGCCCCATCGCCCTCTCCATGTTTGTCAGCACCCACTATGCTGGGAAGGAGGTGACTATGGCATTTGAACAAGGGGAGacttataaaaagatttttggcCCTGTTTTTGTGTACCTAAACTCCGCTTCAAACGACAGTGACTCTGTTTCGCAAACGCTTTGGACAGATGCTGTGCAACAGATGTCTACGGAAACCAAAAGCTGGCCCTATGATTTCCCCCTGTCACAAGATTTCGTTCCACCGGAGCAACGTGGAACTGTCATGGGACGATTACTAGTCCAGGATGTGCACACCAAAGGAGGGAGATTTCTATATGCTGACAATGCTTATGTTGGTCTTGCTCTGCCTGGAGAACCGGGATCATGgcaaaaagaaagcaagGGTTATCAATTCTGGACTCGAGCTGACAAAAAGGGCTACTtcgtaataaaaaatatagtacCAGGGGACTATAATTTATATGCATGGGTTCCTGGCTTTCTTGGTGACTACAAATATAACGCTAACGTTACCATCACACCAGGATGTTTCATCAGACTGGGTTCTCTTATCTATAATCCTCCAAGAAATGGCGCTACCGTTTGGGAAATTGGCATCCCAGACCGGACAGCAGCAGAGTTCTACATACCAGATCCTTACCCTACCCTCATGAATAAATTGTACAATGACCAGCACAAAGAAAGGTTTAGGCAATACGGTTTGTGGGAACGTTACACTGATTTGTATCAGAATAATGACCTCGTTTACACCATTGGTGTTGATAATTACCGCAAAGACTGGTTCTACGCTCATGTTACCAGGAGTGTAGGAAACAAGACGTATGAATCAACAACATGGCAGATTGTCTTTGATCTCCCAAAAGTGCCAGACAGTGGAAACTACACATTACAACTAGCCTTGGCAGCAGCCTCAGATTCTAACTTGCAGGTTCGTTTCAATGATCCAAGTGTTTTCCCTGCTCACTTCTCTACGGGTCCAATAGGCGGAGACAGCTCCATAGCAAGGCACGGCATCCATGGATTGCATAGGTTGTTCAGCATTGATGTGCCTAGCAATCGATTAGTAGAAGGAAACAACACCATTTATCTGAGACAGTCAAAGGCCATAAATCAATTCCAAGGAGTTATGTATGATTATATCAGATTAGAAAAACCTCCATCTCAGAGGACTTA 2069 0.4205 MKKMGEIRKWVFFLWWLGMTLQLCFLLGGCSETTSVRRGVKSRRLASSSLPAIKLNDEDDDQQVVVDNGIVRVTLSTPDGYVLGISFNGIDNVLEAANEHVDRGYWDVVWNEPESKSSFQRITGTEFSVIAANEDQVELSFSRNWTTSMNGSSVPINIDKRYIFRRGDSGFYAYAIFERLEEMPAVEVDQIRIVFKLQEKKFQYMALSDTRQRNMPTMEDRSRGQPLAYPEAVLLTDPSKAEFRGEVDDKYQYSIENKDNSVHGWISPDSDSPVGFWIITPSNEFRNAGPIKQDLTSHVGPIALSMFVSTHYAGKEVTMAFEQGETYKKIFGPVFVYLNSASNDSDSVSQTLWTDAVQQMSTETKSWPYDFPLSQDFVPPEQRGTVMGRLLVQDVHTKGGRFLYADNAYVGLALPGEPGSWQKESKGYQFWTRADKKGYFVIKNIVPGDYNLYAWVPGFLGDYKYNANVTITPGCFIRLGSLIYNPPRNGATVWEIGIPDRTAAEFYIPDPYPTLMNKLYNDQHKERFRQYGLWERYTDLYQNNDLVYTIGVDNYRKDWFYAHVTRSVGNKTYESTTWQIVFDLPKVPDSGNYTLQLALAAASDSNLQVRFNDPSVFPAHFSTGPIGGDSSIARHGIHGLHRLFSIDVPSNRLVEGNNTIYLRQSKAINQFQGVMYDYIRLEKPPSQRT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01247 689 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Bva11g01247 689 CDD RGL4_C 494 682 - -
Bva11g01247 689 Pfam Polysaccharide lyase family 4, domain III 492 681 IPR029411 -
Bva11g01247 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 686 - -
Bva11g01247 689 SUPERFAMILY Galactose-binding domain-like 489 682 IPR008979 -
Bva11g01247 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 686 - -
Bva11g01247 689 CDD RGL4_M 382 482 IPR029413 -
Bva11g01247 689 SUPERFAMILY Starch-binding domain-like 378 479 IPR013784 GO:0030246
Bva11g01247 689 Gene3D - 489 682 - -
Bva11g01247 689 SUPERFAMILY Galactose mutarotase-like 58 349 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bva11g01247 689 Gene3D - 378 475 - -
Bva11g01247 689 Gene3D - 55 360 IPR014718 GO:0030246
Bva11g01247 689 CDD RGL4_N 59 347 - -
Bva11g01247 689 Pfam Polysaccharide lyase family 4, domain II 406 476 IPR029413 -
Bva11g01247 689 Pfam Rhamnogalacturonate lyase family 48 247 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01247 Bva-Chr11 13094625 13100159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01247 53 684 Polysaccharide Lyase AT1G09890 57.256 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01247 K18195 - gmx:100776664 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01191 08 6166965 6170831 Bva11g01247 11 13094625 13100159 BWGD