Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01246 ATGAAGAAGGTTGGTGAAACGAGGGAACATGTCTTCTTCCTCTGGTGGCTATTAACGACTCTTCATTTTCTGAGTGGTTGTTCTGAGAGTACAAGCTTACTTAGCACTGAAGCAAGATCTTCTCTACCTGGTGTGAAGCTGATTAAACAAAAACAGCAGCTGGTGGTTGACAACAGCGTGGTTCGTGTCAGTTTGTCAAAGGATGGCTTTGTCGTTGGTATATCATATAATGGAATTGACAATGTACTTCCTGCTCATCACGACTATATAGATAGAGGGTATTGGGACCTTGTTTGGAATGAACCAGGAGGTATAAGCAATTTTGAGagAATCACGGGGATAAAATTTTCGGTGGTATCAGAAAATGATGATCAGGTAGAGCTTTCATTCTTCAAAGAATGGACATTGTCCGTGACAGGCTCAAGTGTCCCAATGAACATAGACAAAAGGTATATATTTCGTAAAGGTGACTCAGGGTTTTATATGTATGGAATATTTGAGCGCACAGAAGGAATGCCAGCAGTGGAGGTTGATCAAATTAGGGTTGTTTTCAAGCTTCGAGAAGACAGGTTTCATTACATGGCTATATCAGACTCGAGGCAAAGAATCATGCCAAGCACGAAAGACAGATCAACTGGCCATTGCCAACCTCTTGCGTATCCTGAAGCTGTTCTCTTAACCAGTCCAAGTAACCCAGCACTCAAAGGAGAGGTGGATGACAAATACCAATACTCGTGTGAGAATAAAGATAACACTGTTCATGGCTGGATTTCTGATTCCCCTGCACCCGTTGGCTTCTGGATGATAACACCCAGTAATGAATTCCGAAATGGTGGACCAATCAAGCAAGATCTCACATCCCATGTTGGCCCCATCGCCCTCAACATGTTTGTTAGCACTCATTATGCTGGGAAGGAAGTAACAATGGCGTTCCAACAAGGGGAGACTTATAAAAAGGTTTTCGGCCCTGTTTTTGTCTACCTTAACTCTGCTCTTCCTAACAGCCAGGACTCTGTTTCAAAAGAGCTCTGGACAGATGCTAAGAATCAGATGTCTAAGGAAGTCCAAAGGTGGCCCTACGATTTCCCTCAGACACGAGATTACTTTCCACCCAATGAACGGGGAACAATCTCTGGACAATTACTAGTCCAAGACAGGTACATCAAAAGAATAAGATATCAATATGCTGACTCTGCTTATGTTGGTCTTGCTCTCCCAGGAGAAGCAGGGTCATGGCAAAGAGAAAGCAagGGTTACCAATTCTGGACCCAAGCAGACAATAAAGGCTACttcacaataaaaaatgttgtgCCAGGGGACTACAATCTATATGCCTGGGTTCCTGGCATAATAGGCGATTATAGATATAATGCTACCATTACCATAACACCAGGAGGTTTCATCAAATTGGGTTCACTTACATATATTCCTCCAAGAAATGGCCCTACCATTTGGGAAATTGGCATCCCTGACCGTTCAGCAGCAGAGTTCTACGTACCAGACCCTTACCCTACGCTCATCAACAGATTATATAGAGCAAATTCCAAAGAGAGGTTCAGACAATATGGCCTGTGGGAACGTTATGCTGATTTATATAAGAAGAATGACCTGGTTTACAATGTGGGTGTTAGCGATTATAGTAAAGATTGGTTCTTTGAGCATGTTCCAAGGAAGATAGGATATAATACGTACAATCCAACAACATGGCAGattgcttttcattttccaaaGGTTGCAAGGAGTGGAAATTATACACTTCGAATAGCCTTGGCATCAGCCGTAGATTCTGAACTGCAGGTTCGCGTCAATGATCCAAAATCTATTCAACCTGAGTTTACAACAGGTGAGATAGGCGGGGACAGCGCCATAGCGAGGCATGGCGTTCATGGATTGCATTGGTTGTTCAACATAGATGTACCAAGCGATCGATTTTTCAAAGGAAAGAACAGCATCTATCTAACACCGACAAAAGCCAGAACTCCTTTCCTAGGAGTTATGTATGACTATATCCGCTTAGAAAAACCTCCATCTCCAAGGACATTATA 2045 0.421 MKKVGETREHVFFLWWLLTTLHFLSGCSESTSLLSTEARSSLPGVKLIKQKQQLVVDNSVVRVSLSKDGFVVGISYNGIDNVLPAHHDYIDRGYWDLVWNEPGGISNFERITGIKFSVVSENDDQVELSFFKEWTLSVTGSSVPMNIDKRYIFRKGDSGFYMYGIFERTEGMPAVEVDQIRVVFKLREDRFHYMAISDSRQRIMPSTKDRSTGHCQPLAYPEAVLLTSPSNPALKGEVDDKYQYSCENKDNTVHGWISDSPAPVGFWMITPSNEFRNGGPIKQDLTSHVGPIALNMFVSTHYAGKEVTMAFQQGETYKKVFGPVFVYLNSALPNSQDSVSKELWTDAKNQMSKEVQRWPYDFPQTRDYFPPNERGTISGQLLVQDRYIKRIRYQYADSAYVGLALPGEAGSWQRESKGYQFWTQADNKGYFTIKNVVPGDYNLYAWVPGIIGDYRYNATITITPGGFIKLGSLTYIPPRNGPTIWEIGIPDRSAAEFYVPDPYPTLINRLYRANSKERFRQYGLWERYADLYKKNDLVYNVGVSDYSKDWFFEHVPRKIGYNTYNPTTWQIAFHFPKVARSGNYTLRIALASAVDSELQVRVNDPKSIQPEFTTGEIGGDSAIARHGVHGLHWLFNIDVPSDRFFKGKNSIYLTPTKARTPFLGVMYDYIRLEKPPSPRTL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01246 681 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Bva11g01246 681 CDD RGL4_M 373 473 IPR029413 -
Bva11g01246 681 SUPERFAMILY Galactose mutarotase-like 53 330 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bva11g01246 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 677 - -
Bva11g01246 681 SUPERFAMILY Galactose-binding domain-like 480 673 IPR008979 -
Bva11g01246 681 Gene3D - 370 469 - -
Bva11g01246 681 Gene3D - 45 346 IPR014718 GO:0030246
Bva11g01246 681 CDD RGL4_N 45 331 - -
Bva11g01246 681 Pfam Rhamnogalacturonate lyase family 45 238 IPR010325 -
Bva11g01246 681 Pfam Polysaccharide lyase family 4, domain III 483 672 IPR029411 -
Bva11g01246 681 SUPERFAMILY Starch-binding domain-like 368 470 IPR013784 GO:0030246
Bva11g01246 681 Gene3D - 480 673 - -
Bva11g01246 681 Pfam Polysaccharide lyase family 4, domain II 397 466 IPR029413 -
Bva11g01246 681 CDD RGL4_C 485 673 - -
Bva11g01246 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01246 Bva-Chr11 13088238 13092735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01246 44 677 Polysaccharide Lyase AT1G09910 55.433 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01246 K18195 - gmx:100776664 926.776