Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01229 ATGGCGAGAGCAACTCATTGGCTATCGTTTGCTTCGCCGGAAATGCTGAGGCTCTCGGAACCTCAGTTTCCTCAACATGACAGCTCGTCTGCTACCTCTCACTACTTTGTCGACAACTACTTTGCCAATGGGTGGGTAAACCCCAAGCCTCAGGTTCAGTACGAGCAAAACCAGAGCAAAGACAGGCAAGCACAGAGTATGGCGGAATCATCCATTTTCACAAGCTTCATGGACCCACACCATCAAAACCAGCAAGTCCccaaatttgaagattttctCGGCGGTGATTCCTCCTCGATCATGCGCTATTCTGATAGCCAAACGGAGACTCAAGATTCCTCGCTCACTCAGATATACGATCATGGCTCTACCTATTTCAGTGACCAGCAGGATCTGAAAGCAATTGCTGGACTTCAAGCTTTCTCCACCAACTCGGGTTCTGAAGTCGACGACTCAGCCTCAATCGCCAAAACTCATAATACTTGCCCCGATTTCGCAACTCACTCAATTGAGTCATCGGGGAACGGATTGGCCTTCTCTGGCTGCGCCACCGCTGGTGCTTTGTCTCTCGGCGTCACTCAAACTTCCGACAAGGCCATTGTGGCGGAGGATTCGGATTCATCCAAAAAGGTTATCAATACCTTTGGCCAGCGTACTTCAATTTACAGAGGAGTCACCAGACATAGGTGGACGGGTAGATATGAAGCGCATCTATGGGACAACAGCTGCAGAAGAGAGGGTCAGGCGAGGAAAGGGCGTCAAGTGTATTTGGGTGGATATGACAAGGAAGATAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTGAAGTACTGGGGCCCCACCGCTACTACAAACTTCCCTGTTTCCAACTATACTAAGGAATTGGAGGACATGAAACATGTAACAAAGCAAGAGTTTATTGCGTCATTGCGAAGGAAAAGTAGTGGTTTTTCAAGGGGAGCTTCTATCTACAGGGGCGTGACAAGGCATCATCAGCAAGGCAGATGGCAAGCAAGAATTGGTCGTGTTGCTGGCAACAAAGATCTGTACCTTGGAACATTTGCTACTGAGGAAGAAGCAGCAGAGGCATATGACATTGCTGCCATAAAGTTCAGAGGAGCCAATGCTGTAACCAATTTTGAGATGAGCAGATATGATGTTGATGCTATCATTAAGAATTCTCTTCCAGTTGGTGGAGCGGCAAAACGCTTGAAGCTTTCTTTGGAATCAGAGCAGCAGTCTCCCGTGACCGGTAACCAGCAAGCCCAATATATAGACGTGAATAGCAGCATCAATTTCTCAGCCATTCAGCCAGCTGCTCCTATTCCATGTGGTATTCCCTTTGATCCTGCAACAGCTTACTATCATCCTAACATCTTCCACCATTATCTACCAAGCACCACCACCGCTGCAGAGTCTGCTGTATCTACCACCGCCGTTGCTCCATTGACAGCACCACCAGCAGCAGCGGTAGCTCCCGAGTTTTTCATATGGCCTCACCTATCATATTG 1511 0.4798 MARATHWLSFASPEMLRLSEPQFPQHDSSSATSHYFVDNYFANGWVNPKPQVQYEQNQSKDRQAQSMAESSIFTSFMDPHHQNQQVPKFEDFLGGDSSSIMRYSDSQTETQDSSLTQIYDHGSTYFSDQQDLKAIAGLQAFSTNSGSEVDDSASIAKTHNTCPDFATHSIESSGNGLAFSGCATAGALSLGVTQTSDKAIVAEDSDSSKKVINTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYTKELEDMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVDAIIKNSLPVGGAAKRLKLSLESEQQSPVTGNQQAQYIDVNSSINFSAIQPAAPIPCGIPFDPATAYYHPNIFHHYLPSTTTAAESAVSTTAVAPLTAPPAAAVAPEFFIWPHLSY 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01229 500 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 PRINTS Ethylene responsive element binding protein signature 360 380 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 SUPERFAMILY DNA-binding domain 220 286 IPR016177 GO:0003677
Bva11g01229 500 ProSiteProfiles AP2/ERF domain profile. 221 284 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 ProSiteProfiles AP2/ERF domain profile. 320 378 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 SUPERFAMILY DNA-binding domain 319 380 IPR016177 GO:0003677
Bva11g01229 500 CDD AP2 220 286 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 CDD AP2 319 380 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 Pfam AP2 domain 221 276 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 Pfam AP2 domain 320 370 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 497 - -
Bva11g01229 500 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 29 497 - -
Bva11g01229 500 Gene3D AP2/ERF domain 320 380 IPR036955 GO:0003700|GO:0006355
Bva11g01229 500 Gene3D AP2/ERF domain 221 286 IPR036955 GO:0003700|GO:0006355
Bva11g01229 500 SMART rav1_2 320 384 IPR001471 GO:0003700|GO:0006355
Bva11g01229 500 SMART rav1_2 221 290 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01229 Bva-Chr11 13001162 13005930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01229 45 500 AP2-EREBP Transcription Factor Family AT5G10510 57.904 2.94e-177 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva11g01229 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01229 K09285 - vvi:100854470 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01204 08 6243045 6247910 Bva11g01229 11 13001162 13005930 BWGD