Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01200 ATGGAAGAAGCTCTTAGGCGGCTGAACGGAATGGCTCCTATTCCAGAACCCGACCCTGTTGACTGCATTCCCGACCACCAGAAGAAGTGCACTACCGCTGCCAACAAGAGGAACTCAAGAGAAAACGGCGGTGGCTCTGGTGGTACTTTAAGGTACCGTGGAGTTCGGCGTAGGCCATGGGGTCGTTACGCTGCCGAGATAAGGGACCCGCAGTCGAAGGAGCGCCGATGGCTCGGAACCTTCGACACGGCTGAGGAAGCCGCCTGCGCTTACGATTGCGCTGCCCGAGCCATGCGTGGCTCTAAAGCACGAACTAATTTTGTCTACCCAAATTCACCGCCGCACTCTGCCAACGACCACCACCTCTTCCCTCCCTTCAACTTGTCAAAACAATCTCAGATGTCCTTCAACAAAATCCACCGCCATTTGGGAGCCTCAGCTGCTGATTGGTCTTCTTACGCTAATCATCAAGCGAGCGACTTTTCATCTGCAGCGTCGCAGAGAAACTCATCACTGAACATGCTTCTGCTTCGTGATTTCCtcaactcttcttcttctaacaCATCTTTGATTTCTTCTCTTAAGCCTTTTCACGAGCAGTTGCCCTACACCAATGGCATTAGCTCTTCATCACCCCCTTCTACTTGCTGTTCGTGTTCTTGTTCATCTGCATCATCATCATTGCCCATCTCTAGTGGTTTCTCTGCTTGCTGTACTGTGAATCCTTATAACAGCGCCGTCGGGTCTTCTTCCAACATGCTGAATCGCAGTGACCAAAATCGTGAAACGAAGAATTCTGAAACTGACGATGACTCGGAGTTCTTTCCCAGAGAGCCTTCAGGTTCAGGATTGTTGGAAGAGGTCGTCAACAGGTTCTTCTCAAAGTCCAAGGAAGGTGAGACCAGTCCACCAAAAGCTGAGGCTTTATTCAACTCTGAATCGCTTCCTCCGCTCCCAGCGTCTGACATGTTCGTTCCGACCACTCAGAGCTACGACGAAACGAGGTGGAGGTTTACAACGGACGAGCCTTTTGTTGTCTCTCTCGAACAACAAGATTTCCCGATGCAGCAATTGGATGGCTTTAACCCCACGCAGGCTATGCCATTTGGGAGCATTCATGACCAGTTAATGTTGACGAGTGATTTGGACTACTCTTTGGTGGGAGATGTTTTTCAGGGCTCCGAGTTTCTGACTTCATTTTGCAGCCAGGATGCAGAATGCTTAATCTA 1229 0.4947 MEEALRRLNGMAPIPEPDPVDCIPDHQKKCTTAANKRNSRENGGGSGGTLRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGSKARTNFVYPNSPPHSANDHHLFPPFNLSKQSQMSFNKIHRHLGASAADWSSYANHQASDFSSAASQRNSSLNMLLLRDFLNSSSSNTSLISSLKPFHEQLPYTNGISSSSPPSTCCSCSCSSASSSLPISSGFSACCTVNPYNSAVGSSSNMLNRSDQNRETKNSETDDDSEFFPREPSGSGLLEEVVNRFFSKSKEGETSPPKAEALFNSESLPPLPASDMFVPTTQSYDETRWRFTTDEPFVVSLEQQDFPMQQLDGFNPTQAMPFGSIHDQLMLTSDLDYSLVGDVFQGSEFLTSFCSQDAECLI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01200 409 MobiDBLite consensus disorder prediction 21 35 - -
Bva11g01200 409 MobiDBLite consensus disorder prediction 1 52 - -
Bva11g01200 409 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Bva11g01200 409 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Bva11g01200 409 CDD AP2 51 107 IPR001471 GO:0003700|GO:0006355
Bva11g01200 409 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Bva11g01200 409 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Bva11g01200 409 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Bva11g01200 409 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 402 - -
Bva11g01200 409 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 402 - -
Bva11g01200 409 MobiDBLite consensus disorder prediction 260 276 - -
Bva11g01200 409 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Bva11g01200 409 MobiDBLite consensus disorder prediction 248 281 - -
Bva11g01200 409 SMART rav1_2 51 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01200 Bva-Chr11 12846703 12847932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01200 1 128 AP2-EREBP Transcription Factor Family AT1G24590 52.349 4.08e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva11g01200 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01200 - - vri:117923446 266.544