Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01168 ATGGAGGAAATGTACGGACTGACTTCGACGGGGGAGTTTTCGGACAAGGCGTTGATGACGCCGGAGAATCTGATACCGGCGGATTACCAGAACTTTTTCATGTCCTTCGGCGCCCGGATTCCGATGTTCGGATCGGATGAGTTGCTGTCTGCTGCTTCCGCAATTACGGAAGCTGAAGCTTCCATTACTCCAGATGTTCAGCGCGAAGAGGACGCCTCCTCCCTCATCAAAGCCAAAATCGCTGCTCATCCTTACTATCCTAGTCTCCTTCAAGCTTACATCGATTGTCAGAAGGTGGGAGCACCTCCGGAAATTGCATGTTTGTTAGACGAAATCAAGGGAGAAAACGACTTTTGTAAGCAAAACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGTGACATGCTGATCAAGTATAAATCTGATCTGGCGCGCCCTTTTGATGAAGCGACCACGTTCCTCAACAAGATCGAGATGCAACTGAGCGATCTCCGAACTTCTGTTCAAACACTTTCCGATGATGGGGATGTATCTTCAGAAGAAGATTTCAGCACAGGAGATGTTGATGGTCAAGATGATCAGTCGCGCGGTGAAGATCGAGAGCTTAAGGATAGGCTTCTACGCAAGTTCGGGAGTCACATTAGTACTTTGAAGTTGGAGTTctcaaagaagagaaagaagggtAAGCTACCAAAAGAAGCCAGACAGACACTGTTCGAGTGGTGGAATGGTCATTACAAATGGCCATACCCGACGGAAGCTGATAAGATTACACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATAAATCAGAGGAAGCGTCACTGGAAACCATCAGACAACATGCAATTTTCTATGATGGATAATCTGACTGGGCCATTCTTTACTGATGAATG 941 0.4591 MEEMYGLTSTGEFSDKALMTPENLIPADYQNFFMSFGARIPMFGSDELLSAASAITEAEASITPDVQREEDASSLIKAKIAAHPYYPSLLQAYIDCQKVGAPPEIACLLDEIKGENDFCKQNVVSTCFGADPELDEFMETYCDMLIKYKSDLARPFDEATTFLNKIEMQLSDLRTSVQTLSDDGDVSSEEDFSTGDVDGQDDQSRGEDRELKDRLLRKFGSHISTLKLEFSKKRKKGKLPKEARQTLFEWWNGHYKWPYPTEADKITLAKSTGLDQKQINNWFINQRKRHWKPSDNMQFSMMDNLTGPFFTDE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01168 313 CDD homeodomain 242 294 IPR001356 GO:0003677
Bva11g01168 313 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 312 - -
Bva11g01168 313 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 312 - -
Bva11g01168 313 SUPERFAMILY Homeodomain-like 231 307 IPR009057 -
Bva11g01168 313 ProSitePatterns 'Homeobox' domain signature. 268 291 IPR017970 GO:0000981|GO:0006355
Bva11g01168 313 ProSiteProfiles 'Homeobox' domain profile. 230 293 IPR001356 GO:0003677
Bva11g01168 313 SMART ELK_2 210 231 IPR005539 GO:0003677
Bva11g01168 313 Coils Coil 163 183 - -
Bva11g01168 313 MobiDBLite consensus disorder prediction 179 210 - -
Bva11g01168 313 Pfam Homeobox KN domain 250 289 IPR008422 GO:0003677|GO:0006355
Bva11g01168 313 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Bva11g01168 313 Pfam ELK domain 210 231 IPR005539 GO:0003677
Bva11g01168 313 Pfam KNOX1 domain 76 116 IPR005540 GO:0003677|GO:0005634
Bva11g01168 313 ProSiteProfiles ELK domain profile. 210 230 IPR005539 GO:0003677
Bva11g01168 313 Pfam KNOX2 domain 128 173 IPR005541 GO:0003677|GO:0005634
Bva11g01168 313 Gene3D - 229 303 - -
Bva11g01168 313 SMART KNOX2_2 124 175 IPR005541 GO:0003677|GO:0005634
Bva11g01168 313 SMART HOX_1 232 297 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01168 Bva-Chr11 12672449 12687703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01168 1 313 Homeobox Transcription Factor Family AT1G23380 66.565 1.14e-145 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva11g01168 KNOX2 6.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01168 - - gmx:100803730 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01273 08 6650791 6658069 Bva11g01168 11 12672449 12687703 BWGD
Bva11g01168 11 12672449 12687703 Bva11g01168 11 12672449 12687703 ECH