Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01142 ATGAGAGGTTTAGGGAATAGCGTGGAGTTGCTTAGACCCTTGGTCGAGACCAAAGCTTGGAATTACGCTGTTGTTTGGAAATATGGCGATGACCCAACAAGGTTTATTGAGTGGATGGGTTGCTGTTGCATGGGGGCTGGCAGAGGAGATAATGAGCGGGGCaagaccaaagaagaaaaaggtgtAGAATACTCGATTTGCAGGGATAGCTTCTATCAGCATCCAGTGAGAACAAAGGCTTGTGAGGCTATTGCCCAGCTTCCTTATACAATGTCACTGTACTCTGGTGTCCATGGAGAGGTTGCCGTATCAAATCAACCGAGATGGATTACCCAGGAAGCAACTGGAACCCAAGTTTTGATCCCCATTGTTGGTGGTCTTGTTGAGCTGTTCACCTTAAAGCTTATACCAAAAGATATAAAGATAATAGAGTTCATAACAGCACACAGCTATTTCTCTTTGAAGCAAGAAGCCATGTCTCCACAGAGCTGTACAAATCTGAGCCTCAATGAGCATCCACCGTCAGAAGAATGCTATTTACTCTCACAGAGGTGCCCATCCGCCTCACTGAcatcaagtttaatttctaGGGTACATCTTGCTGCAGTGACCCAGAACAGCTCCTATCATTGTATTGAAGGATCGTCCAGTGGGTCAAATCCTTCAAATGAACATACATCATCTGATatgaaaattgttttcttgaCTGAGCATGAAAATTTGAACCAGTCAGTTAAACAATCTTCTAGCTTTAAAAGGTCCAAGTGCAATGAAACTTCGCGAAGGAAACAGAAAGTTTTGGGTTTCAATTGTGGCACTCTGGAAGAAGACAATCCAAAACTGATCAGGGAGACTCAAGGCTACCATTCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAGGATCAAAGATGGGCTTTTTGCTCTAAGGGCTCTAGTCCCAAAAATCACGAAAATGGACAGAGCGTCGATTCTTGGAGATGCAATTAGCTATATACAGGAATTGCAGGAGCAAGAAAAAGAGCTTAGAAATGAGATTAGGAATTTGGAAGAAGAGAACTGCGAGAACCCATCAAATTGGAGGATGACAACAGACAAGGCACAAGGATTTACTAAAAGTCAAGCTTTCACTGAGTTCAACCAAAGTTCCTCTGGTTGCATTAGAAAGACAGCAATGGAGGTACGCAAGGTGCAAGTGAACGTGCACCAGATAGGCAGGAGAGATTTCTTGATTACATTGTGCTGTGAGCAGAAGCGAGGTGGGTTTGCGAGGTTGATGGAGACAATACATTCATTTGGACTGCAGGTAACTAATGCCAATTCAACCACATTTGATGGCAAAGTTCTCAACATTCTGACAGTTGAGGCAAGCAAGCATGATATTCAACCGAAGAAATTGAGAGAGTATTTGATCGAGCGAACAGGTTG 1430 0.4196 MRGLGNSVELLRPLVETKAWNYAVVWKYGDDPTRFIEWMGCCCMGAGRGDNERGKTKEEKGVEYSICRDSFYQHPVRTKACEAIAQLPYTMSLYSGVHGEVAVSNQPRWITQEATGTQVLIPIVGGLVELFTLKLIPKDIKIIEFITAHSYFSLKQEAMSPQSCTNLSLNEHPPSEECYLLSQRCPSASLTSSLISRVHLAAVTQNSSYHCIEGSSSGSNPSNEHTSSDMKIVFLTEHENLNQSVKQSSSFKRSKCNETSRRKQKVLGFNCGTLEEDNPKLIRETQGYHSKNLVTERNRRNRIKDGLFALRALVPKITKMDRASILGDAISYIQELQEQEKELRNEIRNLEEENCENPSNWRMTTDKAQGFTKSQAFTEFNQSSSGCIRKTAMEVQVNVHQIGRRDFLITLCCEQKRGGFARLMETIHSFGLQVTNANSTTFDGKVLNILTVEASKHDIQPKKLREYLIERTG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01142 473 Gene3D - 283 363 IPR036638 GO:0046983
Bva11g01142 473 Pfam Helix-loop-helix DNA-binding domain 295 337 IPR011598 GO:0046983
Bva11g01142 473 PANTHER TRANSCRIPTION FACTOR BHLH90 62 472 - -
Bva11g01142 473 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 62 472 - -
Bva11g01142 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 357 IPR036638 GO:0046983
Bva11g01142 473 CDD ACT_UUR-ACR-like 408 471 - -
Bva11g01142 473 ProSiteProfiles ACT domain profile. 408 473 IPR002912 -
Bva11g01142 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Bva11g01142 473 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 147 IPR025610 -
Bva11g01142 473 Coils Coil 326 356 - -
Bva11g01142 473 SMART finulus 293 342 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01142 Bva-Chr11 12551682 12554683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01142 4 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 33.397 7.37e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva11g01142 bHLH-MYC_N 1.8e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01142 - - gmx:100807261 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01142 11 12551682 12554683 Bva11g01142 11 12551682 12554683 ECH