Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01110 ATGTCTTGGGTTCACTCAGAAATTCATCAAAGGAGTGGTGCTCTAACCAGCCATCCCGTTCTTTCCCCTTCTTCTTCTATATTGCCTTACGATTCTCACTACCAAAAGCAATCAAGCCCACATCCAGTTTCTTCATCTAGCAGTAAAATAAGCCCTGcagttctttttattatagtCATTCTAGCTGTTGTTTTTTTCATCTCTGGTCTCCTTCACTTGCTTGTTAGATATCTTGTAAAGCACAGGTCTTCATCAATCTCTCAATCCAATAGATACCCAGAAATGTTTGAATCTGATGCTTACCAGAGACAATTACAGCAGCTTTTCCATCTTCATGATTCAGGCCTAGATCAGGCTTTCATAGATGCTCTCCCAGTCTTCCTTTATAAAGAGATAATAGGTTTAAAAGAGCCGTTTGATTGTGCTGTTTGCCTTTGTGAATTCTCAGAAGAAGACAATCTGAGATTGTTACCCATGTGTAATCATGCTTTTCACATTGACTGCATAGACACATGGTTACTGTCTAATTCAACTTGTCCTCTCTGTAGAGGTACCCTTTATACACCAGGTTTTGCCTTTGAAAACCCAGCTTTTTACTTTGAAGATCCTAGGGAAGAAGATGGGGTTTCAGGCAGTGCTGGAGGTGGGGCTTGTTCTGTTCACAAACCTGCCGAAAATGACATTACTGTTGGAAAAAGGGTGTTTTCTGTTAGACTTGGAAAATTTAGAAGCTCAAATATTGGAGAGGGAGTAGAAAGAGGGGAAGGGGAGAGTAGTAACAGTAAGTTGGATGCAAGAAGATGCTATTCAATGGGATCTTGCCAATATGTAGTCGCTGCTTGCGACCTGCAAGTGTCTTTAAGCCGTAGTAGAGTTAATGGAAGTACCAATAGCAGTTTTAGACAGTTGAAAGGGAGAGCAACCCACAATGGGAATTCTTCCATTGAAGGGGATGCAGAGGGAAAAAATCTAAACCTTGCAAGGAAAGGTGAAAGCTTTTCCGTTTCCAAGATCTGGCTATGGTCCAAGAAAGATAAATTGCCAATTTGTTCAGAAACCCATATGGGCAATTCCACTGTCACTGCGAATTCAGCATGGATGATCACAACAAGAGGTACATG 1121 0.4077 MSWVHSEIHQRSGALTSHPVLSPSSSILPYDSHYQKQSSPHPVSSSSSKISPAVLFIIVILAVVFFISGLLHLLVRYLVKHRSSSISQSNRYPEMFESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFSEEDNLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYTPGFAFENPAFYFEDPREEDGVSGSAGGGACSVHKPAENDITVGKRVFSVRLGKFRSSNIGEGVERGEGESSNSKLDARRCYSMGSCQYVVAACDLQVSLSRSRVNGSTNSSFRQLKGRATHNGNSSIEGDAEGKNLNLARKGESFSVSKIWLWSKKDKLPICSETHMGNSTVTANSAWMITTRGT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01110 373 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Bva11g01110 373 MobiDBLite consensus disorder prediction 296 319 - -
Bva11g01110 373 CDD RING-H2_PA-TM-RING 140 183 - -
Bva11g01110 373 SUPERFAMILY RING/U-box 120 189 - -
Bva11g01110 373 Pfam Ring finger domain 140 183 IPR001841 -
Bva11g01110 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 361 - -
Bva11g01110 373 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 361 - -
Bva11g01110 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 188 IPR013083 -
Bva11g01110 373 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01110 Bva-Chr11 12381606 12383975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01110 43 346 C3H Transcription Factor Family AT2G18650 40.059 3.57e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01110 - - gmx:100818135 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01110 11 12381606 12383975 Bva11g01110 11 12381606 12383975 ECH
Bva11g01110 11 12381606 12383975 Bva04g00653 04 4357780 4359898 ECH